RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA807685" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA807685 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4634797 4634797 PRJNA807685_P_NODE_11144_length_489_cov_3.856195_g10092_i0 PRJNA807685 11144 489 3.856195 18.85679355 Ureaplasma diversum 42094 Bacteria Bacteria 54.7 0.013   NTclustered gi|764071633|gb|CP009770.1| 42094 g10092 i0 100 0.0593047034764826 29 0 6 0 3 31 531979 531951 Ureaplasma diversum strain ATCC 49782 genome blastn 29 54.7 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Ureaplasma Ureaplasma diversum
13976706 13976706 PRJNA807685_P_NODE_61451_length_156_cov_4.924370_g60378_i0 PRJNA807685 61451 156 4.92437 7.6820172 Acholeplasma 2147 Bacteria Bacteria 106 9.72e-19   NTclustered gi|1403529253|emb|LS483439.1| 2148 g60378 i0 81.679 31.5961538461538 131 21 83 3 1 129 88985 88856 Acholeplasma laidlawii strain NCTC10116 genome assembly, chromosome: 1 blastn 4929 106 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma laidlawii
14834886 14834886 PRJNA807685_P_NODE_47152_length_178_cov_1.099291_g46079_i0 PRJNA807685 47152 178 1.099291 1.95673798 Malacoplasma penetrans 28227 Bacteria Bacteria 52.8 0.015   NTclustered gi|47118307|dbj|BA000026.2| 272633 g46079 i0 100 0.157303370786517 28 0 16 0 18 45 642226 642199 Mycoplasma penetrans HF-2 DNA, complete genome blastn 28 52.8 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Malacoplasma Malacoplasma penetrans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;