RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA807685" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA807685 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4635012 4635012 PRJNA807685_P_NODE_36004_length_207_cov_1.864706_g34931_i0 PRJNA807685 36004 207 1.864706 3.85994142 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 54.7 0.005   NTclustered gi|2874253939|emb|OY970264.1| 171953 g34931 i0 100 0.140096618357488 29 0 14 0 145 173 1023607 1023635 MAG: uncultured Acidobacteriota bacterium isolate MFD03726.bin.c.8 genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
16109206 16109206 PRJNA807685_P_NODE_9693_length_545_cov_8.795276_g8666_i0 PRJNA807685 9693 545 8.795276 47.9342542 Candidatus Acidiferrales bacterium 2952895 Bacteria Bacteria 60.2 3.2e-4   NTclustered gi|2874253721|emb|OY969563.1| 2952895 g8666 i0 83.824 0.124770642201835 68 6 12 5 15 79 2593322 2593387 MAG: Candidatus Acidoferrales bacterium isolate MFD05580.bin.1.43 genome assembly, chromosome: 1 blastn 68 60.2 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales     Candidatus Acidiferrales bacterium
18658004 18658004 PRJNA807685_P_NODE_39615_length_195_cov_2.689873_g38542_i0 PRJNA807685 39615 195 2.689873 5.24525235 uncultured Acidobacteriaceae bacterium 194844 Bacteria Bacteria 69.4 1.67e-7   NTclustered gi|2874254120|emb|OY970205.1| 194844 g38542 i0 74.317 0.938461538461538 183 37 91 9 4 181 5100414 5100237 MAG: uncultured Acidobacteriaceae bacterium isolate MFD02248.bin.1.24 genome assembly, chromosome: 1 blastn 183 69.4 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   uncultured Acidobacteriaceae bacterium
18658033 18658033 PRJNA807685_P_NODE_4375_length_1144_cov_2.999097_g3693_i0 PRJNA807685 4375 1144 2.999097 34.30966968 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 492 5.789999999999998e-134   NTclustered gi|2874254056|emb|OY970380.1| 2651171 g3693 i0 82.264 61.5008741258741 592 84 51 19 563 1142 629044 629626 MAG: Thermoanaerobaculia bacterium isolate MFD05537.bin.c.2 genome assembly, chromosome: 1 blastn 70357 492 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
21208672 21208672 PRJNA807685_P_NODE_13377_length_425_cov_9.100515_g12315_i0 PRJNA807685 13377 425 9.100515 38.67718875 Candidatus Acidiferrales bacterium 2952895 Bacteria Bacteria 62.1 6.81e-5   NTclustered gi|2874253721|emb|OY969563.1| 2952895 g12315 i0 84.058 0.442352941176471 69 6 16 5 190 255 2593321 2593387 MAG: Candidatus Acidoferrales bacterium isolate MFD05580.bin.1.43 genome assembly, chromosome: 1 blastn 188 62.1 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales     Candidatus Acidiferrales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;