RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA807685" and tax_clade = "Sar"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA807685 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5909971 5909971 PRJNA807685_P_NODE_36845_length_204_cov_1.676647_g35772_i0 PRJNA807685 36845 204 1.676647 3.42035988 Plasmodium sp. gorilla clade G2 880535 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.005   NTclustered gi|1620174939|ref|XM_028682934.1| 880535 g35772 i0 100 0.142156862745098 29 0 14 0 41 69 844 816 Plasmodium sp. gorilla clade G2 sporozoite and liver stage asparagine-rich protein (PADL01_1145100), partial mRNA blastn 29 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium sp. gorilla clade G2
13560245 13560245 PRJNA807685_P_NODE_43731_length_185_cov_1.574324_g42658_i0 PRJNA807685 43731 185 1.574324 2.9124994 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 230 6.799999999999999e-56   NTclustered gi|325195820|emb|FR826611.1| 890382 g42658 i0 90.341 71.2648648648649 176 15 95 2 9 183 23 197 Albugo laibachii Nc14, genomic contig CONTIG_3778_NC14_v4_313_8 blastn 13184 230 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
13560309 13560309 PRJNA807685_P_NODE_53171_length_167_cov_2.307692_g52098_i0 PRJNA807685 53171 167 2.307692 3.85384564 Colpoda cucullus 63137 SAR_Eukaryotes SAR_Eukaryotes 219 1.3099999999999999e-52   NTclustered gi|358350409|dbj|AB684382.1| 63137 g52098 i0 93.333 90.1736526946108 150 7 88 3 1 147 325 176 Colpoda cucullus gene for 18S rRNA, partial sequence blastn 15059 219 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda cucullus
20349101 20349101 PRJNA807685_P_NODE_18796_length_329_cov_1.585616_g17724_i0 PRJNA807685 18796 329 1.585616 5.21667664 root 1 Root_unresolved Root_unresolved 582 8.879999999999998e-162   NTclustered gi|166044558|emb|CU367467.1| 100861 g17724 i0 98.48 99.8115501519757 329 5 100 0 1 329 783 455 Aphanomyces euteiches cDNA blastn 32838 586 0.993174061433447 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
22483383 22483383 PRJNA807685_P_NODE_27778_length_247_cov_2.009524_g26705_i0 PRJNA807685 27778 247 2.009524 4.96352428 Plasmodium inui 52288 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|672203137|ref|XM_008820314.1| 1237626 g26705 i0 96.97 0.133603238866397 33 0 13 1 96 127 204 172 Plasmodium inui San Antonio 1 hypothetical protein partial mRNA blastn 33 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium inui
22483588 22483588 PRJNA807685_P_NODE_59298_length_159_cov_1.639344_g58225_i0 PRJNA807685 59298 159 1.639344 2.60655696 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 87.9 3.61e-13   NTclustered gi|471236634|ref|XM_004040082.1| 5932 g58225 i0 82.653 1.75471698113208 98 17 62 0 14 111 500 597 Ichthyophthirius multifiliis hypothetical protein (IMG5_000530) mRNA, complete cds blastn 279 87.9 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;