RNAquarium Metadata Server
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contig_metadata

34 rows where analysis = "blastn", bioproject = "PRJNA806354" and tax_phylum = "Streptophyta"

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tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 34 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA806354 · 34 ✖

analysis 1

  • blastn · 34 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
806039 806039 PRJNA806354_P_NODE_35801_length_250_cov_0.870056_g35692_i0 PRJNA806354 35801 250 0.870056 2.17514 Vitis vinifera 29760 Plants Plants 457 4.1099999999999985e-124   NTclustered gi|123715102|emb|AM481601.1| 29760 g35692 i0 99.6 10.008 250 1 100 0 1 250 90253 90502 Vitis vinifera, whole genome shotgun sequence, contig VV78X227551.28, clone ENTAV 115 blastn 2502 457 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Vitales Vitaceae Vitis Vitis vinifera
806092 806092 PRJNA806354_P_NODE_40521_length_242_cov_0.911243_g40412_i0 PRJNA806354 40521 242 0.911243 2.20520806 Rosa chinensis 74649 Plants Plants 448 2.3799999999999995e-121   NTclustered gi|2021633185|ref|XM_024330213.2| 74649 g40412 i0 100 92.6776859504132 242 0 100 0 1 242 156 397 PREDICTED: Rosa chinensis 60S ribosomal protein L31 (LOC112190735), mRNA blastn 22428 448 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Rosa Rosa chinensis
806098 806098 PRJNA806354_P_NODE_41441_length_241_cov_0.910714_g41332_i0 PRJNA806354 41441 241 0.910714 2.19482074 Brassica rapa 3711 Plants Plants 418 1.8599999999999995e-112   NTclustered gi|1827666816|ref|XM_009111689.3| 3711 g41332 i0 97.925 85.746887966805 241 5 100 0 1 241 1348 1588 PREDICTED: Brassica rapa protein RBL (LOC103835503), transcript variant X1, mRNA blastn 20665 418 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica rapa
2081871 2081871 PRJNA806354_P_NODE_42902_length_211_cov_4.347826_g42793_i0 PRJNA806354 42902 211 4.347826 9.17391286 Helianthus annuus 4232 Plants Plants 385 1.61e-102   NTclustered gi|1898332200|ref|XM_035990199.1| 4232 g42793 i0 99.526 11.0568720379147 211 1 100 0 1 211 1273 1483 PREDICTED: Helianthus annuus protein DETOXIFICATION 24 (LOC110873542), transcript variant X2, mRNA blastn 2333 385 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Helianthus Helianthus annuus
2497951 2497951 PRJNA806354_P_NODE_39322_length_244_cov_0.900585_g39213_i0 PRJNA806354 39322 244 0.900585 2.1974274 Oryza 4527 Plants Plants 448 2.4e-121   NTclustered gi|2348148712|ref|XM_052294849.1| 4538 g39213 i0 100 6.9672131147541 242 0 99 0 2 243 662 903 PREDICTED: Oryza glaberrima uncharacterized LOC127769310 (LOC127769310), mRNA blastn 1700 449 0.997772828507795 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza glaberrima
2497958 2497958 PRJNA806354_P_NODE_9122_length_464_cov_2.920716_g9013_i0 PRJNA806354 9122 464 2.920716 13.55212224 Magnoliopsida 3398 Plants Plants 857 0   NTclustered gi|1899897194|gb|MT726210.1| 3711 g9013 i0 100 200 464 0 100 0 1 464 105755 106218 Brassica rapa chloroplast, complete genome blastn 92800 857 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica rapa
3774156 3774156 PRJNA806354_P_NODE_13523_length_386_cov_1.731629_g13414_i0 PRJNA806354 13523 386 1.731629 6.68408794 Brassica 3705 Plants Plants 702 0   NTclustered gi|2258182701|ref|XM_048778631.1| 3708 g13414 i0 99.482 67.5 386 2 100 0 1 386 1740 1355 PREDICTED: Brassica napus ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (LOC106447457), mRNA blastn 26055 708 0.991525423728814 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica napus
4634500 4634500 PRJNA806354_P_NODE_38164_length_246_cov_0.890173_g38055_i0 PRJNA806354 38164 246 0.890173 2.18982558 Cucumis sativus 3659 Plants Plants 455 1.4500000000000002e-123   NTclustered gi|1784853636|ref|XM_004137971.3| 3659 g38055 i0 100 10.2642276422764 246 0 100 0 1 246 596 841 PREDICTED: Cucumis sativus magnesium protoporphyrin IX methyltransferase, chloroplastic (LOC101206600), mRNA blastn 2525 455 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Cucurbitales Cucurbitaceae Cucumis Cucumis sativus
5050459 5050459 PRJNA806354_P_NODE_19764_length_326_cov_2.648221_g19655_i0 PRJNA806354 19764 326 2.648221 8.63320046 Raphanus 3725 Plants Plants 603 6.749999999999998e-168   NTclustered gi|2515495161|ref|XR_008941074.1| 3726 g19655 i0 100 156.432515337423 326 0 100 0 1 326 1003 678 PREDICTED: Raphanus sativus 18S ribosomal RNA (LOC130503935), rRNA blastn 50997 603 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Raphanus Raphanus sativus
5050471 5050471 PRJNA806354_P_NODE_35804_length_250_cov_0.870056_g35695_i0 PRJNA806354 35804 250 0.870056 2.17514 Vitis 3603 Plants Plants 462 8.83e-126   NTclustered gi|111379073|gb|DQ834696.1| 29760 g35695 i0 100 96.884 250 0 100 0 1 250 432 183 Vitis vinifera putative aquaporin (PIP1;3) mRNA, complete cds blastn 24221 462 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Vitales Vitaceae Vitis Vitis vinifera
7184329 7184329 PRJNA806354_P_NODE_37426_length_247_cov_1.316092_g37317_i0 PRJNA806354 37426 247 1.316092 3.25074724 Raphanus sativus 3726 Plants Plants 233 7.429999999999999e-57   NTclustered gi|345431524|dbj|AB608418.1| 3726 g37317 i0 95.238 10.663967611336 147 7 60 0 101 247 186 332 Raphanus sativus DNA, microsatellite locus RsSA006, cultivar: rat-tail radish blastn 2634 233 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Raphanus Raphanus sativus
8459080 8459080 PRJNA806354_P_NODE_39667_length_243_cov_1.911765_g39558_i0 PRJNA806354 39667 243 1.911765 4.64558895 Oryza sativa 4530 Plants Plants 449 6.65e-122   NTclustered gi|52076763|dbj|AP004651.3| 39947 g39558 i0 100 8.39506172839506 243 0 100 0 1 243 30103 30345 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0091G06 blastn 2040 449 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
10150930 10150930 PRJNA806354_P_NODE_34328_length_254_cov_1.430939_g34219_i0 PRJNA806354 34328 254 1.430939 3.63458506 Oryza 4527 Plants Plants 464 2.4999999999999994e-126   NTclustered gi|815859367|gb|KM036293.1| 4528 g34219 i0 99.606 109.240157480315 254 1 100 0 1 254 2408 2661 Oryza longistaminata 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence blastn 27747 464 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza longistaminata
11009936 11009936 PRJNA806354_P_NODE_39429_length_244_cov_0.900585_g39320_i0 PRJNA806354 39429 244 0.900585 2.1974274 Rosa chinensis 74649 Plants Plants 451 1.86e-122   NTclustered gi|2021648739|ref|XM_040518970.1| 74649 g39320 i0 100 4 244 0 100 0 1 244 346 103 PREDICTED: Rosa chinensis universal stress protein YxiE (LOC112199878), mRNA blastn 976 451 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Rosa Rosa chinensis
12285476 12285476 PRJNA806354_P_NODE_38190_length_246_cov_0.890173_g38081_i0 PRJNA806354 38190 246 0.890173 2.18982558 Raphanus sativus 3726 Plants Plants 206 1.61e-48   NTclustered gi|2515543788|ref|XM_018622268.2| 3726 g38081 i0 85.075 6.01626016260163 201 30 82 0 43 243 1861 2061 PREDICTED: Raphanus sativus uncharacterized LOC108848823 (LOC108848823), mRNA blastn 1480 206 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Raphanus Raphanus sativus
13559567 13559567 PRJNA806354_P_NODE_26731_length_285_cov_1.872642_g26622_i0 PRJNA806354 26731 285 1.872642 5.3370297 Vitis riparia 96939 Plants Plants 453 6.18e-123   NTclustered gi|1847832817|ref|XM_034824060.1| 96939 g26622 i0 96.39 8.13333333333333 277 7 97 3 1 277 31 304 PREDICTED: Vitis riparia kininogen-1-like (LOC117910008), transcript variant X1, mRNA blastn 2318 453 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Vitales Vitaceae Vitis Vitis riparia
13559575 13559575 PRJNA806354_P_NODE_28731_length_276_cov_2.059113_g28622_i0 PRJNA806354 28731 276 2.059113 5.68315188 Rosa chinensis 74649 Plants Plants 510 3.48e-140   NTclustered gi|2021640676|ref|XM_024335346.2| 74649 g28622 i0 100 14.4891304347826 276 0 100 0 1 276 628 353 PREDICTED: Rosa chinensis outer envelope pore protein 16-3, chloroplastic/mitochondrial (LOC112195035), mRNA blastn 3999 510 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Rosa Rosa chinensis
13559660 13559660 PRJNA806354_P_NODE_38571_length_245_cov_1.366279_g38462_i0 PRJNA806354 38571 245 1.366279 3.34738355 Helianthus annuus 4232 Plants Plants 448 2.41e-121   NTclustered gi|1898353926|ref|XM_022179914.2| 4232 g38462 i0 99.592 5.05714285714286 245 1 100 0 1 245 479 235 PREDICTED: Helianthus annuus protein CURVATURE THYLAKOID 1B, chloroplastic (LOC110937491), mRNA blastn 1239 448 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Helianthus Helianthus annuus
14834299 14834299 PRJNA806354_P_NODE_37132_length_248_cov_0.874286_g37023_i0 PRJNA806354 37132 248 0.874286 2.16822928 Vitis vinifera 29760 Plants Plants 440 4.0999999999999997e-119   NTclustered gi|147791243|emb|AM458223.2| 29760 g37023 i0 98.785 7.65725806451613 247 3 99 0 2 248 4224 3978 Vitis vinifera contig VV78X119505.39, whole genome shotgun sequence blastn 1899 440 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Vitales Vitaceae Vitis Vitis vinifera
16525177 16525177 PRJNA806354_P_NODE_12093_length_407_cov_2.982036_g11984_i0 PRJNA806354 12093 407 2.982036 12.13688652 Brassica 3705 Plants Plants 745 0   NTclustered gi|2623882548|ref|NM_001425617.1| 3708 g11984 i0 99.754 97.4914004914005 406 1 99 0 2 407 666 261 Brassica napus ribulose bisphosphate carboxylase small subunit, chloroplastic 1 (LOC106444894), mRNA; nuclear gene for chloroplast product blastn 39679 745 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica napus
16525179 16525179 PRJNA806354_P_NODE_18253_length_338_cov_1.667925_g18144_i0 PRJNA806354 18253 338 1.667925 5.6375865 Brassicaceae 3700 Plants Plants 603 7.019999999999999e-168   NTclustered gi|2258140704|ref|XR_007336353.1| 3708 g18144 i0 98.817 100 338 4 100 0 1 338 1473 1810 PREDICTED: Brassica napus 28S ribosomal RNA (LOC125604621), rRNA blastn 33800 603 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica napus
17384376 17384376 PRJNA806354_P_NODE_38334_length_246_cov_0.867052_g38225_i0 PRJNA806354 38334 246 0.867052 2.13294792 Vitis vinifera 29760 Plants Plants 438 1.4599999999999996e-118   NTclustered gi|147822383|emb|AM477505.2| 29760 g38225 i0 98.374 28.7032520325203 246 4 100 0 1 246 43400 43155 Vitis vinifera contig VV78X063132.15, whole genome shotgun sequence blastn 7061 438 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Vitales Vitaceae Vitis Vitis vinifera
18657451 18657451 PRJNA806354_P_NODE_36555_length_249_cov_0.875000_g36446_i0 PRJNA806354 36555 249 0.875 2.17875 Brassica rapa 3711 Plants Plants 460 3.16e-125   NTclustered gi|1827671017|ref|XM_009132572.3| 3711 g36446 i0 100 41.2248995983936 249 0 100 0 1 249 915 667 PREDICTED: Brassica rapa calcineurin B-like protein 1 (LOC103855561), transcript variant X2, mRNA blastn 10265 460 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica rapa
19932781 19932781 PRJNA806354_P_NODE_39356_length_244_cov_0.900585_g39247_i0 PRJNA806354 39356 244 0.900585 2.1974274 Vitis vinifera 29760 Plants Plants 414 2.44e-111   NTclustered gi|123718643|emb|AM439337.1| 29760 g39247 i0 97.166 1.01229508196721 247 4 100 1 1 244 8758 8512 Vitis vinifera, whole genome shotgun sequence, contig VV78X043554.3, clone ENTAV 115 blastn 247 414 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Vitales Vitaceae Vitis Vitis vinifera
20348773 20348773 PRJNA806354_P_NODE_31316_length_266_cov_1.000000_g31207_i0 PRJNA806354 31316 266 1 2.66 Glycine 3846 Plants Plants 486 5.629999999999999e-133   NTclustered gi|1448291768|ref|XR_003264397.1| 3847 g31207 i0 100 98.8721804511278 263 0 99 0 1 263 2122 1860 PREDICTED: Glycine max 28S ribosomal RNA (LOC112999219), rRNA blastn 26300 486 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Glycine Glycine max
20348778 20348778 PRJNA806354_P_NODE_35756_length_250_cov_1.158192_g35647_i0 PRJNA806354 35756 250 1.158192 2.89548 Oryza 4527 Plants Plants 440 4.1399999999999976e-119   NTclustered gi|815859367|gb|KM036293.1| 4528 g35647 i0 98.785 119.44 247 3 99 0 4 250 4959 5205 Oryza longistaminata 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence blastn 29860 440 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza longistaminata
20348782 20348782 PRJNA806354_P_NODE_38996_length_244_cov_2.608187_g38887_i0 PRJNA806354 38996 244 2.608187 6.36397628 root 1 Root_unresolved Root_unresolved 446 8.639999999999999e-121   NTclustered gi|2065944015|gb|MN603471.1| 3702 g38887 i0 99.59 196 244 1 100 0 1 244 101471 101714 Arabidopsis thaliana chloroplast, complete genome blastn 47824 446 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Arabidopsis Arabidopsis thaliana
22482902 22482902 PRJNA806354_P_NODE_26318_length_287_cov_1.771028_g26209_i0 PRJNA806354 26318 287 1.771028 5.08285036 Rosa chinensis 74649 Plants Plants 531 2.799999999999999e-146   NTclustered gi|2021629097|ref|XM_024327963.2| 74649 g26209 i0 100 3.27526132404181 287 0 100 0 1 287 215 501 PREDICTED: Rosa chinensis cyclin-B1-2 (LOC112188762), mRNA blastn 940 531 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Rosa Rosa chinensis
22482928 22482928 PRJNA806354_P_NODE_29558_length_273_cov_1.455000_g29449_i0 PRJNA806354 29558 273 1.455 3.97215 Brassica rapa 3711 Plants Plants 505 1.6e-138   NTclustered gi|1827830098|ref|XM_009145530.2| 3711 g29449 i0 100 105.56043956044 273 0 100 0 1 273 69 341 PREDICTED: Brassica rapa chlorophyll a-b binding protein 1, chloroplastic (LOC103867457), mRNA blastn 28818 505 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica rapa
22899985 22899985 PRJNA806354_P_NODE_34958_length_252_cov_1.111732_g34849_i0 PRJNA806354 34958 252 1.111732 2.80156464 Glycine 3846 Plants Plants 464 2.4799999999999998e-126   NTclustered gi|2661022|gb|AF035256.1|AF035256 3847 g34849 i0 100 45.8571428571429 251 0 99 0 1 251 695 945 Glycine max catalase (cat5) mRNA, partial cds blastn 11556 464 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Glycine Glycine max
22899991 22899991 PRJNA806354_P_NODE_4898_length_617_cov_2.205882_g4790_i0 PRJNA806354 4898 617 2.205882 13.61029194 Brassicaceae 3700 Plants Plants 1123 0   NTclustered gi|383930428|ref|NC_016734.1| 3708 g4790 i0 99.514 202 617 3 100 0 1 617 104308 103692 Brassica napus chloroplast, complete genome blastn 124634 1123 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica napus
23758758 23758758 PRJNA806354_P_NODE_7979_length_494_cov_1.634204_g7870_i0 PRJNA806354 7979 494 1.634204 8.07296776 Arabidopsis thaliana 3702 Plants Plants 52.8 0.048   NTclustered gi|4159705|dbj|AB022216.1| 3702 g7870 i0 100 0.11336032388664 28 0 6 0 5 32 7266 7239 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGD8 blastn 56 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Arabidopsis Arabidopsis thaliana
25449009 25449009 PRJNA806354_P_NODE_11860_length_411_cov_2.381657_g11751_i0 PRJNA806354 11860 411 2.381657 9.78861027 Brassicaceae 3700 Plants Plants 745 0   NTclustered gi|2065944015|gb|MN603471.1| 3702 g11751 i0 99.274 200.973236009732 413 1 100 1 1 411 105732 106144 Arabidopsis thaliana chloroplast, complete genome blastn 82600 745 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Arabidopsis Arabidopsis thaliana
25449023 25449023 PRJNA806354_P_NODE_32120_length_262_cov_2.777778_g32011_i0 PRJNA806354 32120 262 2.777778 7.27777836 Brassicales 3699 Plants Plants 483 7.149999999999997e-132   NTclustered gi|2065944015|gb|MN603471.1| 3702 g32011 i0 100 199.236641221374 261 0 99 0 2 262 104943 104683 Arabidopsis thaliana chloroplast, complete genome blastn 52200 483 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Arabidopsis Arabidopsis thaliana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;