RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA804229" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA804229 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3773853 3773853 PRJNA804229_S_NODE_55283_length_270_cov_1.960352_g54325_i0 PRJNA804229 55283 270 1.960352 5.2929504 Campylobacter 194 Bacteria Bacteria 499 7.349999999999998e-137   NTclustered gi|1483583505|emb|LT631429.1| 204 g54325 i0 100 241.159259259259 270 0 100 0 1 270 30942 31211 Campylobacter showae genome assembly, plasmid: V blastn 65113 499 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae
5050133 5050133 PRJNA804229_S_NODE_180624_length_152_cov_1.321101_g179666_i0 PRJNA804229 180624 152 1.321101 2.00807352 root 1 Root_unresolved Root_unresolved 281 1.46e-71   NTclustered gi|1483583505|emb|LT631429.1| 204 g179666 i0 100 110 152 0 100 0 1 152 33176 33327 Campylobacter showae genome assembly, plasmid: V blastn 16720 281 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae
17799633 17799633 PRJNA804229_S_NODE_26794_length_360_cov_2.725552_g25836_i0 PRJNA804229 26794 360 2.725552 9.8119872 Campylobacter 194 Bacteria Bacteria 660 0   NTclustered gi|1483583505|emb|LT631429.1| 204 g25836 i0 99.722 274.622222222222 360 1 100 0 1 360 29298 29657 Campylobacter showae genome assembly, plasmid: V blastn 98864 660 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae
23756737 23756737 PRJNA804229_S_NODE_40559_length_308_cov_2.758491_g39601_i0 PRJNA804229 40559 308 2.758491 8.49615228 Campylobacter ureolyticus 827 Bacteria Bacteria 569 6.419999999999998e-158   NTclustered gi|1829985141|gb|CP050963.1| 827 g39601 i0 100 248.383116883117 308 0 100 0 1 308 203571 203264 Campylobacter ureolyticus strain FDAARGOS_673 chromosome blastn 76502 569 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter ureolyticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;