RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA804229" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 1 ✖

bioproject 1

  • PRJNA804229 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4630853 4630853 PRJNA804229_S_NODE_141284_length_172_cov_1.062016_g140326_i0 PRJNA804229 141284 172 1.062016 1.82666752 Microvenator marinus 2600177 Bacteria Bacteria 195 2.27e-45   NTclustered gi|1722470586|gb|CP042467.1| 2600177 g140326 i0 87.574 154.843023255814 169 20 98 1 1 169 703422 703255 Microvenator marinus strain V1718 chromosome, complete genome blastn 26633 195 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Microvenatoraceae Microvenator Microvenator marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;