RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA801875" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA801875 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
801063 801063 PRJNA801875_P_NODE_401_length_705_cov_43.629851_g155_i1 PRJNA801875 401 705 43.629851 307.59044955 Pendulispora rubella 2741070 Bacteria Bacteria 1101 0   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g155 i1 95.021 173.025531914894 703 31 99 3 1 703 7289558 7288860 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 121983 1101 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
9729150 9729150 PRJNA801875_P_NODE_228_length_930_cov_30.401117_g155_i0 PRJNA801875 228 930 30.401117 282.7303881 Pendulispora rubella 2741070 Bacteria Bacteria 1166 0   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g155 i0 89.525 122.418279569892 926 89 99 7 1 923 7289128 7290048 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 113849 1166 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
23753767 23753767 PRJNA801875_P_NODE_4599_length_152_cov_8.282051_g4496_i0 PRJNA801875 4599 152 8.282051 12.58871752 Labilithrix luteola 1391654 Bacteria Bacteria 217 4.16e-52   NTclustered gi|913610804|gb|CP012333.1| 1391654 g4496 i0 99.167 124.486842105263 120 1 97 0 30 149 3945041 3944922 Labilithrix luteola strain DSM 27648, complete genome blastn 18922 217 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;