RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA801875" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA801875 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2076894 2076894 PRJNA801875_P_NODE_4322_length_157_cov_1.868852_g4219_i0 PRJNA801875 4322 157 1.868852 2.93409764 Polyschismium peyerimhoffii 2911783 Evosea other_Eukaryota 150 4.47e-32   NTclustered gi|2161226355|gb|MZ313553.1| 2911783 g4219 i0 85.714 6.0828025477707 147 16 94 4 5 151 3501 3642 Polyschismium peyerimhoffii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 955 150 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Polyschismium Polyschismium peyerimhoffii
7179385 7179385 PRJNA801875_P_NODE_1726_length_286_cov_1.780876_g1623_i0 PRJNA801875 1726 286 1.780876 5.09330536 Echinostelium minutum 300235 Evosea other_Eukaryota 291 5.15e-74   NTclustered gi|210062522|gb|AY842034.2| 300235 g1623 i0 85.714 16.1083916083916 280 35 98 5 4 282 11 286 Echinostelium minutum strain ATCC 22345 18S ribosomal RNA gene, partial sequence blastn 4607 291 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Echinosteliales Echinosteliidae Echinostelium Echinostelium minutum
9729171 9729171 PRJNA801875_P_NODE_3868_length_167_cov_0.886364_g3765_i0 PRJNA801875 3868 167 0.886364 1.48022788 Cavenderia fasciculata 261658 Evosea other_Eukaryota 54.7 0.004   NTclustered gi|470267841|ref|XM_004362120.1| 261658 g3765 i0 100 0.173652694610778 29 0 17 0 14 42 2211 2183 Cavenderia fasciculata putative RNA helicase (ddx42), partial mRNA blastn 29 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
18652524 18652524 PRJNA801875_P_NODE_1475_length_319_cov_1.658451_g1372_i0 PRJNA801875 1475 319 1.658451 5.29045869 Dictyostelium purpureum 5786 Evosea other_Eukaryota 272 2.11e-68   NTclustered gi|330822609|ref|XM_003291694.1| 5786 g1372 i0 82.372 1.10031347962382 312 55 98 0 5 316 461 150 Dictyostelium purpureum uncharacterized protein (rasG), mRNA blastn 351 272 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;