RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA801875" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA801875 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13554702 13554702 PRJNA801875_P_NODE_3191_length_185_cov_1.513333_g3088_i0 PRJNA801875 3191 185 1.513333 2.79966605 Auxenochlorella protothecoides 3075 Plants Plants 337 3.89e-88   NTclustered gi|570364818|gb|KC843975.1| 3075 g3088 i0 100 70.2432432432432 182 0 98 0 1 182 37211 37392 Auxenochlorella protothecoides chloroplast, complete genome blastn 12995 337 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
18652567 18652567 PRJNA801875_P_NODE_4535_length_153_cov_52.627119_g4432_i0 PRJNA801875 4535 153 52.627119 80.51949207 Chlamydomonas sp. TK-1983 3056 Plants Plants 219 1.1699999999999999e-52   NTclustered gi|174203|gb|K02345.1|CRERRA 3056 g4432 i0 100 1 118 0 100 0 1 118 1 118 Chlamydomonas sp. TK-1983 5S ribosomal RNA gene, complete sequence blastn 153 219 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. TK-1983
25027590 25027590 PRJNA801875_P_NODE_2380_length_226_cov_1.780105_g2277_i0 PRJNA801875 2380 226 1.780105 4.0230373 Koliella corcontica 155904 Plants Plants 89.8 1.53e-13   NTclustered gi|2724824266|gb|PP746555.1| 155904 g2277 i0 77.632 44.2212389380531 152 31 66 3 77 226 3503 3653 Koliella corcontica culture SAG:24.84 mitochondrion, complete genome blastn 9994 89.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella corcontica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;