RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA801875" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA801875 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2076898 2076898 PRJNA801875_P_NODE_4542_length_153_cov_2.305085_g4439_i0 PRJNA801875 4542 153 2.305085 3.52678005 Pseudo-nitzschia cuspidata 237455 SAR_Eukaryotes SAR_Eukaryotes 111 2.04e-20   NTclustered gi|2055404604|ref|NC_056161.1| 237455 g4439 i0 85.981 28.6274509803922 107 12 69 3 19 124 14732 14628 Pseudo-nitzschia cuspidata strain CNS00150 mitochondrion, complete genome blastn 4380 111 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia cuspidata
9729181 9729181 PRJNA801875_P_NODE_588_length_568_cov_1.675422_g488_i0 PRJNA801875 588 568 1.675422 9.51639696 Melosira undulata 2133757 SAR_Eukaryotes SAR_Eukaryotes 167 1.92e-36   NTclustered gi|1418576929|ref|NC_037728.1| 2133757 g488 i0 79.051 12.2781690140845 253 46 44 7 53 302 30899 31147 Melosira undulata mitochondrion, complete genome blastn 6974 167 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Melosirales Melosiraceae Melosira Melosira undulata
14829524 14829524 PRJNA801875_P_NODE_4752_length_150_cov_2.652174_g4649_i0 PRJNA801875 4752 150 2.652174 3.978261 Nitzschia dissipatoides 3068544 SAR_Eukaryotes SAR_Eukaryotes 95.3 2e-15   NTclustered gi|2721954031|gb|OR464346.1| 3068544 g4649 i0 89.333 8.38666666666667 75 8 50 0 25 99 9486 9560 Nitzschia dissipatoides mitochondrion, complete genome blastn 1258 95.3 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia dissipatoides
17799359 17799359 PRJNA801875_P_NODE_1394_length_332_cov_2.171717_g1291_i0 PRJNA801875 1394 332 2.171717 7.21010044 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 466 9.43e-127   NTclustered gi|1803023461|gb|MN937452.1| 2850 g1291 i0 95.238 184.28313253012 294 14 89 0 37 330 68043 67750 Phaeodactylum tricornutum strain ICE-H chloroplast, complete genome blastn 61182 466 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
19927867 19927867 PRJNA801875_P_NODE_2156_length_242_cov_1.376812_g2053_i0 PRJNA801875 2156 242 1.376812 3.33188504 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 278 3.3e-70   NTclustered gi|146762526|gb|EF553458.1| 2850 g2053 i0 88.462 91.2561983471074 234 21 96 5 7 239 4361 4133 Phaeodactylum tricornutum strain CCAP 1055/1 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 22084 278 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
23753738 23753738 PRJNA801875_P_NODE_199_length_993_cov_2.852818_g131_i0 PRJNA801875 199 993 2.852818 28.32848274 Lithodesmioides sp. mgcode 4 2914905 SAR_Eukaryotes SAR_Eukaryotes 241 1.9999999999999993e-58   NTclustered gi|2073953334|gb|MW849271.1| 2914905 g131 i0 74.634 49.0745216515609 615 122 61 30 7 608 5441 4848 Lithodesmioides sp. mgcode 4 isolate Qingdao in China mitochondrion, complete genome blastn 48731 241 1 Eukaryota Sar   Bacillariophyta Mediophyceae Lithodesmiales Lithodesmiaceae Lithodesmioides Lithodesmioides sp. mgcode 4

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;