RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA801875" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA801875 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13554697 13554697 PRJNA801875_P_NODE_2911_length_196_cov_3.360248_g2808_i0 PRJNA801875 2911 196 3.360248 6.58608608 Stenophora draconis 2977109 SAR_Eukaryotes SAR_Eukaryotes 69.4 1.68e-7   NTclustered gi|2295827472|gb|OP390087.1| 2977109 g2808 i0 83.333 0.397959183673469 78 10 39 3 3 79 3990 3915 Stenophora sp. TMiroliubova-2022b isolate T35 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 78 69.4 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Stenophoridae Stenophora Stenophora draconis
16524585 16524585 PRJNA801875_P_NODE_833_length_460_cov_3.261176_g731_i0 PRJNA801875 833 460 3.261176 15.0014096 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 344 6.58e-90   NTclustered gi|2785765936|ref|XM_067218065.1| 5824 g731 i0 83.333 102.2 378 57 82 5 6 380 831 457 Plasmodium brasilianum polyubiquitin (MKS88_004855), partial mRNA blastn 47012 344 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium brasilianum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;