RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA801875" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA801875 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8454050 8454050 PRJNA801875_P_NODE_1607_length_300_cov_6.150943_g1504_i0 PRJNA801875 1607 300 6.150943 18.452829 Cetobacterium somerae 188913 Bacteria Bacteria 542 1.36e-149   NTclustered gi|2201062197|gb|CP092519.1| 188913 g1504 i0 99.331 464.813333333333 299 2 99 0 1 299 49165 48867 Cetobacterium somerae strain CS2105-BJ chromosome, complete genome blastn 139444 542 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
13975676 13975676 PRJNA801875_P_NODE_651_length_534_cov_11.206413_g549_i0 PRJNA801875 651 534 11.206413 59.84224542 Cetobacterium 180162 Bacteria Bacteria 970 0   NTclustered gi|2865368125|gb|CP122294.1| 188913 g549 i0 99.438 515.661048689139 534 3 100 0 1 534 279528 278995 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 275363 970 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
17799381 17799381 PRJNA801875_P_NODE_3994_length_164_cov_1.217054_g3891_i0 PRJNA801875 3994 164 1.217054 1.99596856 Leptotrichia 32067 Bacteria Bacteria 204 3.5699999999999997e-48   NTclustered gi|1708579770|dbj|AP019840.1| 109328 g3891 i0 89.222 480.536585365854 167 12 100 5 1 164 177969 178132 Leptotrichia trevisanii JMUB3935 DNA, complete genome blastn 78808 204 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia trevisanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;