RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA800090" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA800090 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4626028 4626028 PRJNA800090_P_NODE_156044_length_250_cov_1.988950_g153859_i0 PRJNA800090 156044 250 1.98895 4.972375 Corallococcus sp. EGB 1521117 Bacteria Bacteria 56.5 0.002   NTclustered gi|2094564806|gb|CP079946.1| 1521117 g153859 i0 96.97 0.132 33 1 13 0 58 90 3896937 3896905 Corallococcus sp. EGB chromosome, complete genome blastn 33 56.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp. EGB
4629246 4629246 PRJNA800090_S_NODE_32904_length_230_cov_0.894410_g32792_i0 PRJNA800090 32904 230 0.89441 2.057143 Corallococcus sp. EGB 1521117 Bacteria Bacteria 56.5 0.002   NTclustered gi|2094564806|gb|CP079946.1| 1521117 g32792 i0 96.97 0.143478260869565 33 1 14 0 161 193 3896905 3896937 Corallococcus sp. EGB chromosome, complete genome blastn 33 56.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp. EGB
25024791 25024791 PRJNA800090_P_NODE_184580_length_231_cov_0.901235_g182395_i0 PRJNA800090 184580 231 0.901235 2.08185285 Myxococcus xanthus 34 Bacteria Bacteria 52.8 0.021   NTclustered gi|1957989826|gb|CP068048.1| 34 g182395 i0 100 0.121212121212121 28 0 12 0 87 114 1550885 1550912 Myxococcus xanthus strain R31 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;