RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA800090" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA800090 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13974374 13974374 PRJNA800090_P_NODE_161831_length_245_cov_1.636364_g159646_i0 PRJNA800090 161831 245 1.636364 4.0090918 Metamycoplasmataceae 2895623 Bacteria Bacteria 453 5.1900000000000006e-123   NTclustered gi|1563788636|emb|LR214955.1| 2115 g159646 i0 100 21.5142857142857 245 0 100 0 1 245 433309 433065 Mycoplasma fermentans strain NCTC10117 genome assembly, chromosome: 1 blastn 5271 453 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis fermentans
17375411 17375411 PRJNA800090_P_NODE_132114_length_275_cov_1.417476_g129929_i0 PRJNA800090 132114 275 1.417476 3.898059 Mycoplasma capricolum 2095 Bacteria Bacteria 124 5.28e-24   NTclustered gi|2429847899|gb|CP101903.1| 40479 g129929 i0 89.796 76.2145454545455 98 8 36 1 30 127 832065 831970 Mycoplasma capricolum subsp. capricolum strain HN-B chromosome, complete genome blastn 20959 124 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma capricolum
17798311 17798311 PRJNA800090_P_NODE_190334_length_229_cov_0.900000_g188149_i0 PRJNA800090 190334 229 0.9 2.061 Metamycoplasmataceae 2895623 Bacteria Bacteria 424 3.76e-114   NTclustered gi|1563790229|emb|LR214963.1| 2115 g188149 i0 100 13.2532751091703 229 0 100 0 1 229 189169 188941 Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 9 blastn 3035 424 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis fermentans
21200770 21200770 PRJNA800090_P_NODE_189757_length_229_cov_0.912500_g187572_i0 PRJNA800090 189757 229 0.9125 2.089625 Mycoplasma cottewii 51364 Bacteria Bacteria 276 1.11e-69   NTclustered gi|2294785939|gb|CP103424.1| 51364 g187572 i0 88.462 2.04366812227074 234 20 100 4 1 229 881381 881612 Mycoplasma cottewii strain VIS chromosome, complete genome blastn 468 276 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma cottewii
24171755 24171755 PRJNA800090_P_NODE_125979_length_283_cov_2.200935_g123794_i0 PRJNA800090 125979 283 2.200935 6.22864605 Mesomycoplasma 2923352 Bacteria Bacteria 518 2.14e-142   NTclustered gi|1720621726|gb|CP035041.1| 2100 g123794 i0 99.647 15 283 1 100 0 1 283 644344 644062 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 4245 518 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;