RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA800090" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA800090 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2496961 2496961 PRJNA800090_P_NODE_95842_length_334_cov_2.705660_g93657_i0 PRJNA800090 95842 334 2.70566 9.0369044 Deinococcus 1298 Bacteria Bacteria 544 4.26e-150   NTclustered gi|470483488|ref|NR_076595.1| 310783 g93657 i0 96.142 208.730538922156 337 6 99 7 1 333 846 1179 Deinococcus deserti strain VCD115 23S ribosomal RNA gene, complete sequence blastn 69716 544 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus deserti
7175757 7175757 PRJNA800090_P_NODE_149106_length_257_cov_1.436170_g146921_i0 PRJNA800090 149106 257 1.43617 3.6909569 Deinococcus sp. QL22 2939437 Bacteria Bacteria 411 3.349999999999999e-110   NTclustered gi|2238957582|gb|CP097149.1| 2939437 g146921 i0 95.385 217.634241245136 260 8 100 3 1 257 1361484 1361742 Deinococcus sp. QL22 chromosome, complete genome blastn 55932 411 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. QL22
9726514 9726514 PRJNA800090_P_NODE_193948_length_227_cov_3.645570_g191763_i0 PRJNA800090 193948 227 3.64557 8.2754439 Deinococcus sp. NW-56 2080419 Bacteria Bacteria 329 8.34e-86   NTclustered gi|1339790003|gb|CP026516.1| 2080419 g191763 i0 93.333 207.052863436123 225 12 99 3 2 226 543347 543126 Deinococcus sp. NW-56 chromosome, complete genome blastn 47001 329 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. NW-56
10148773 10148773 PRJNA800090_P_NODE_143388_length_262_cov_5.336788_g141203_i0 PRJNA800090 143388 262 5.336788 13.98238456 Deinococcus 1298 Bacteria Bacteria 265 2.8199999999999996e-66   NTclustered gi|470478007|ref|NR_076423.1| 68909 g141203 i0 85.171 142.12213740458 263 33 99 6 1 260 210 469 Deinococcus geothermalis plasmid pDGEO01 strain AG-3a 23S ribosomal RNA gene, complete sequence blastn 37236 265 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;