RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA800090" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 10 ✖

bioproject 1

  • PRJNA800090 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2074964 2074964 PRJNA800090_P_NODE_48742_length_515_cov_1.221973_g46562_i0 PRJNA800090 48742 515 1.221973 6.29316095 Chlamydomonas incerta 51695 Plants Plants 387 1.22e-102   NTclustered gi|74272606|gb|DQ122868.1| 51695 g46562 i0 81.957 51.4582524271845 460 79 89 4 22 479 29 486 Chlamydomonas incerta 40S ribosomal protein S3 mRNA, complete cds blastn 26501 387 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
4627107 4627107 PRJNA800090_P_NODE_25724_length_773_cov_1.386364_g23753_i0 PRJNA800090 25724 773 1.386364 10.71659372 Chlorella variabilis 554065 Plants Plants 477 1.0799999999999996e-129   NTclustered gi|552830805|ref|XM_005847928.1| 554065 g23753 i0 78.755 82.1280724450194 739 138 94 14 1 725 907 174 Chlorella variabilis hypothetical protein (RACK1) mRNA, complete cds blastn 63485 477 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
8452209 8452209 PRJNA800090_P_NODE_51207_length_499_cov_1.241860_g49025_i0 PRJNA800090 51207 499 1.24186 6.1968814 Chlamydomonas reinhardtii 3055 Plants Plants 252 4.4799999999999995e-62   NTclustered gi|2082260161|ref|XM_001690941.2| 3055 g49025 i0 79.301 36.2444889779559 372 68 74 8 85 453 193 558 Chlamydomonas reinhardtii ribosomal protein S23 (CHLRE_12g504200v5), mRNA blastn 18086 252 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
9725430 9725430 PRJNA800090_P_NODE_145808_length_260_cov_1.528796_g143623_i0 PRJNA800090 145808 260 1.528796 3.9748696 Monoraphidium neglectum 145388 Plants Plants 111 3.85e-20   NTclustered gi|926795717|ref|XM_014050538.1| 145388 g143623 i0 77.717 11.0615384615385 184 39 70 2 1 183 237 55 Monoraphidium neglectum 40S ribosomal protein S20-1 mRNA blastn 2876 111 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
11001338 11001338 PRJNA800090_P_NODE_150389_length_256_cov_0.898396_g148204_i0 PRJNA800090 150389 256 0.898396 2.29989376 Dunaliella tertiolecta 3047 Plants Plants 185 2.2e-42   NTclustered gi|534958|emb|X66036.1| 3047 g148204 i0 79.845 78.4609375 258 48 100 4 1 256 418 163 D.tertiolecta mRNA for S11 ribosomal protein blastn 20086 185 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella tertiolecta
13974344 13974344 PRJNA800090_P_NODE_158151_length_248_cov_2.173184_g155966_i0 PRJNA800090 158151 248 2.173184 5.38949632 Bryopsis 3128 Plants Plants 298 2.61e-76   NTclustered gi|969822372|gb|KT950953.1| 3129 g155966 i0 89.121 92.8508064516129 239 26 96 0 8 246 650 412 Bryopsis maxima actin gene, partial cds blastn 23027 298 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis maxima
16100490 16100490 PRJNA800090_P_NODE_172893_length_236_cov_0.874251_g170708_i0 PRJNA800090 172893 236 0.874251 2.06323236 Coccomyxa subellipsoidea 248742 Plants Plants 171 5.6e-38   NTclustered gi|545376104|ref|XM_005652106.1| 574566 g170708 i0 79.832 19.7966101694915 238 44 100 4 1 236 391 626 Coccomyxa subellipsoidea C-169 methionine adenosyltransferase partial mRNA blastn 4672 171 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
21199383 21199383 PRJNA800090_P_NODE_128397_length_280_cov_1.383886_g126212_i0 PRJNA800090 128397 280 1.383886 3.8748808 Chlamydomonas reinhardtii 3055 Plants Plants 195 4.05e-45   NTclustered gi|2082241923|ref|XM_001697441.2| 3055 g126212 i0 80.632 22.7571428571429 253 47 90 2 2 253 1042 791 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_03g160500v5), mRNA blastn 6372 195 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
23750239 23750239 PRJNA800090_P_NODE_155079_length_251_cov_1.604396_g152894_i0 PRJNA800090 155079 251 1.604396 4.02703396 Chlorella variabilis 554065 Plants Plants 78.7 3.75e-10   NTclustered gi|552847345|ref|XM_005851779.1| 554065 g152894 i0 82.955 1.37051792828685 88 13 35 2 155 241 525 439 Chlorella variabilis hypothetical protein (CHLNCDRAFT_133342) mRNA, complete cds blastn 344 78.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
23750660 23750660 PRJNA800090_P_NODE_174179_length_235_cov_0.879518_g171994_i0 PRJNA800090 174179 235 0.879518 2.0668673 Chlamydomonas reinhardtii 3055 Plants Plants 195 3.31e-45   NTclustered gi|2082237163|ref|XM_043058766.1| 3055 g171994 i0 83.575 69.3787234042553 207 34 88 0 14 220 417 211 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g039250v5), mRNA blastn 16304 195 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;