RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA800053" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA800053 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16098755 16098755 PRJNA800053_P_NODE_20833_length_245_cov_4.895349_g20669_i0 PRJNA800053 20833 245 4.895349 11.99360505 Bradybaena similaris 145626 Mollusca Mollusca 67.6 7.9e-7   NTclustered gi|2912987826|dbj|AP039592.1| 145626 g20669 i0 100 36.2408163265306 36 0 18 0 5 40 62039081 62039046 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 11, sequence blastn 8879 67.6 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
17374563 17374563 PRJNA800053_P_NODE_11434_length_292_cov_1.264840_g11270_i0 PRJNA800053 11434 292 1.26484 3.6933328 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.008   NTclustered gi|2912986657|dbj|AP039591.1| 145626 g11270 i0 100 0.0993150684931507 29 0 10 0 1 29 16828781 16828809 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 10, sequence blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
21198607 21198607 PRJNA800053_P_NODE_17137_length_252_cov_1.296089_g16973_i0 PRJNA800053 17137 252 1.296089 3.26614428 Bradybaena similaris 145626 Mollusca Mollusca 427 3.2499999999999993e-115   NTclustered gi|2913001816|dbj|AP039609.1| 145626 g16973 i0 97.59 150.134920634921 249 6 99 0 1 249 1218 1466 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 28, sequence blastn 37834 427 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;