RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA800053" and tax_phylum = "Microsporidia"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA800053 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4624688 4624688 PRJNA800053_P_NODE_264_length_1335_cov_41.876387_g203_i0 PRJNA800053 264 1335 41.876387 559.04976645 Pseudoloma neurophilia 146866 Fungi Fungi 2435 0   NTclustered gi|11993647|gb|AF322654.1| 146866 g203 i0 99.699 92.0531835205992 1328 4 99 0 3 1330 1 1328 Pseudoloma neurophilia small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 122891 2435 1 Eukaryota Opisthokonta Fungi Microsporidia       Pseudoloma Pseudoloma neurophilia
8449319 8449319 PRJNA800053_P_NODE_24027_length_241_cov_0.916667_g23863_i0 PRJNA800053 24027 241 0.916667 2.20916747 Vairimorpha ceranae 40302 Fungi Fungi 52.8 0.022   NTclustered gi|1372265536|ref|XM_024475316.1| 40302 g23863 i0 100 0.116182572614108 28 0 12 0 195 222 1012 985 Nosema ceranae rrna methyl-transferase (AAJ76_3600020832), partial mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Fungi Microsporidia     Nosematidae Vairimorpha Vairimorpha ceranae
8873058 8873058 PRJNA800053_P_NODE_4347_length_430_cov_12.955182_g4184_i0 PRJNA800053 4347 430 12.955182 55.7072826 Heterosporis 157917 Fungi Fungi 595 1.5299999999999995e-165   NTclustered gi|448278452|gb|KC137548.1| 1289055 g4184 i0 91.841 33.7883720930233 429 31 99 3 4 430 3150 3576 Heterosporis sp. NBDP-2013a isolate MN/WAE small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14529 595 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Heterosporis Heterosporis sp. NBDP-2013a
14824538 14824538 PRJNA800053_P_NODE_132_length_1722_cov_39.340206_g105_i0 PRJNA800053 132 1722 39.340206 677.43834732 Pleistophora mulleri 249366 Fungi Fungi 1628 0   NTclustered gi|134147422|gb|EF119339.1| 249366 g105 i0 84.018 36.7973286875726 1752 211 99 58 3 1710 3089 1363 Pleistophora mulleri 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 63365 1628 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Pleistophora Pleistophora mulleri

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;