RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA800053" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA800053 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14824575 14824575 PRJNA800053_P_NODE_16792_length_254_cov_1.436464_g16628_i0 PRJNA800053 16792 254 1.436464 3.64861856 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 388 1.5499999999999998e-103   NTclustered gi|2874253789|emb|OY969773.1| 412054 g16628 i0 98.198 138.157480314961 222 4 87 0 4 225 421773 421994 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 35092 388 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
18647757 18647757 PRJNA800053_P_NODE_8655_length_326_cov_1.434783_g8491_i0 PRJNA800053 8655 326 1.434783 4.67739258 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 320 7.61e-83   NTclustered gi|575456455|gb|CP007128.1| 861299 g8491 i0 84.923 66.4355828220859 325 39 98 9 4 322 3042327 3042647 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 21658 320 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
19923005 19923005 PRJNA800053_P_NODE_1836_length_619_cov_1.703297_g1682_i0 PRJNA800053 1836 619 1.703297 10.54340843 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 470 1.43e-127   NTclustered gi|2874253789|emb|OY969773.1| 412054 g1682 i0 85.683 78.9386106623586 461 49 98 15 3 456 420876 421326 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 48863 470 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;