RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA800053" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA800053 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
796265 796265 PRJNA800053_P_NODE_9961_length_308_cov_1.957447_g9797_i0 PRJNA800053 9961 308 1.957447 6.02893676 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 531 3.0299999999999998e-146   NTclustered gi|971146634|emb|LN879502.1| 389348 g9797 i0 97.727 62.1428571428571 308 7 100 0 1 308 1250761 1250454 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 19140 531 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
4624607 4624607 PRJNA800053_P_NODE_15764_length_260_cov_2.363636_g15600_i0 PRJNA800053 15764 260 2.363636 6.1454536 Candidatus Piscichlamydia sp. 1977145 Bacteria Bacteria 390 4.419999999999999e-104   NTclustered gi|1175896721|gb|KY380088.1| 1977145 g15600 i0 93.87 78.0615384615385 261 12 99 3 2 260 357 615 Candidatus Piscichlamydia sp. strain EP 16S ribosomal RNA gene, partial sequence blastn 20296 390 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Piscichlamydiaceae Candidatus Piscichlamydia Candidatus Piscichlamydia sp.
23748840 23748840 PRJNA800053_P_NODE_1079_length_759_cov_3.403790_g942_i0 PRJNA800053 1079 759 3.40379 25.8347661 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 1380 0   NTclustered gi|971146634|emb|LN879502.1| 389348 g942 i0 99.604 124.484848484848 757 2 99 1 1 757 1249642 1250397 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 94484 1380 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
23748960 23748960 PRJNA800053_P_NODE_4919_length_408_cov_6.304478_g4756_i0 PRJNA800053 4919 408 6.304478 25.72227024 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 745 0   NTclustered gi|971146634|emb|LN879502.1| 389348 g4756 i0 99.754 115.941176470588 406 1 99 0 1 406 1251516 1251111 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 47304 745 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;