RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA799842" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA799842 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16096940 16096940 PRJNA799842_P_NODE_21633_length_644_cov_1.886165_g20115_i0 PRJNA799842 21633 644 1.886165 12.1469026 Copromyxa laresi 1789826 Tubulinea other_Eukaryota 542 3.12e-149   NTclustered gi|1042160945|dbj|LC102279.1| 1789826 g20115 i0 98.371 3.91614906832298 307 5 48 0 337 643 1 307 Copromyxa sp. MK-2016 gene for elongation factor 2 alpha, partial cds, strain: ZEB1 blastn 2522 542 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa laresi
16097498 16097498 PRJNA799842_P_NODE_4653_length_1403_cov_15.173684_g3955_i0 PRJNA799842 4653 1403 15.173684 212.88678652 Copromyxa protea 931554 Tubulinea other_Eukaryota 1574 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g3955 i0 87.365 27.4041339985745 1393 150 98 16 11 1381 1389 1 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 38448 1574 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
17374310 17374310 PRJNA799842_P_NODE_89534_length_306_cov_1.592275_g87961_i0 PRJNA799842 89534 306 1.592275 4.8723615 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 566 8.239999999999998e-157   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g87961 i0 100 62.6993464052288 306 0 100 0 1 306 955 650 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 19186 566 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
22472078 22472078 PRJNA799842_P_NODE_46278_length_418_cov_1.237681_g44705_i0 PRJNA799842 46278 418 1.237681 5.17350658 Hartmannella cantabrigiensis 239731 Tubulinea other_Eukaryota 662 0   NTclustered gi|33946358|gb|AY294158.1| 239731 g44705 i0 95.215 93.822966507177 418 20 100 0 1 418 1132 715 Hartmannella cantabrigiensis actin mRNA, complete cds blastn 39218 662 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Hartmannella Hartmannella cantabrigiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;