RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA799842" and tax_phylum = "Rhodothermota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA799842 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
792678 792678 PRJNA799842_P_NODE_101301_length_289_cov_1.412037_g99728_i0 PRJNA799842 101301 289 1.412037 4.08078693 uncultured Rubrivirga sp. 1699421 Bacteria Bacteria 494 3.7e-135   NTclustered gi|2795020992|gb|PQ250471.1| 1699421 g99728 i0 97.569 99.6193771626298 288 7 99 0 1 288 15 302 Uncultured Rubrivirga sp. clone OTU616 16S ribosomal RNA gene, partial sequence blastn 28790 494 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga uncultured Rubrivirga sp.
10997555 10997555 PRJNA799842_P_NODE_148869_length_249_cov_0.875000_g147296_i0 PRJNA799842 148869 249 0.875 2.17875 Rhodocaloribacter litoris 2558931 Bacteria Bacteria 73.1 1.73e-8   NTclustered gi|2076465437|gb|CP076718.1| 2558931 g147296 i0 81.373 1.82329317269076 102 8 37 6 1 91 2336664 2336563 Rhodocaloribacter litoris strain ISCAR-4553 chromosome blastn 454 73.1 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodocaloribacter Rhodocaloribacter litoris
23747072 23747072 PRJNA799842_P_NODE_189599_length_241_cov_0.916667_g188026_i0 PRJNA799842 189599 241 0.916667 2.20916747 Rubrivirga sp. IMCC45206 3391614 Bacteria Bacteria 134 7.530000000000001e-27   NTclustered gi|2890849321|gb|CP177357.1| 3391614 g188026 i0 81.481 0.672199170124481 162 30 67 0 30 191 3057694 3057855 Rubrivirga sp. IMCC45206 chromosome, complete genome blastn 162 134 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC45206

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;