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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA799842" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA799842 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7596790 7596790 PRJNA799842_P_NODE_125966_length_260_cov_1.951872_g124393_i0 PRJNA799842 125966 260 1.951872 5.0748672 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 475 1.1899999999999999e-129   NTclustered gi|51235482|gb|AY598628.1| 82932 g124393 i0 99.615 99.8884615384615 260 1 100 0 1 260 1397 1138 Pythium arrhenomanes strain CBS 324.62 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 25971 475 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium arrhenomanes
8872722 8872722 PRJNA799842_P_NODE_68867_length_344_cov_1.988930_g67294_i0 PRJNA799842 68867 344 1.98893 6.8419192 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 630 3.289999999999999e-176   NTclustered gi|505574760|gb|AY598624.2| 4799 g67294 i0 99.709 100.25 344 1 100 0 1 344 604 947 Pythium torulosum strain CBS 316.33 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 34486 636 0.990566037735849 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium torulosum
10998740 10998740 PRJNA799842_P_NODE_39049_length_458_cov_1.184416_g37478_i0 PRJNA799842 39049 458 1.184416 5.42462528 Thraustotheca clavata 74557 SAR_Eukaryotes SAR_Eukaryotes 316 1.43e-81   NTclustered gi|57903352|gb|AY729827.1| 74557 g37478 i0 80.63 91.0502183406114 413 76 90 4 2 412 385 795 Thraustotheca clavata beta-tubulin gene, partial cds blastn 41701 316 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
12273262 12273262 PRJNA799842_P_NODE_164850_length_245_cov_1.877907_g163277_i0 PRJNA799842 164850 245 1.877907 4.60087215 Pythium monospermum 92964 SAR_Eukaryotes SAR_Eukaryotes 425 1.1299999999999999e-114   NTclustered gi|33520250|gb|AY273995.1| 92964 g163277 i0 97.959 101.608163265306 245 5 100 0 1 245 463 707 Pythium monospermum large subunit ribosomal RNA gene, partial sequence blastn 24894 425 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium monospermum
16097244 16097244 PRJNA799842_P_NODE_34613_length_489_cov_2.596154_g33043_i0 PRJNA799842 34613 489 2.596154 12.69519306 Globisporangium ultimum 2052682 SAR_Eukaryotes SAR_Eukaryotes 837 0   NTclustered gi|299830435|ref|NC_014280.1| 2052682 g33043 i0 97.741 103.513292433538 487 10 99 1 2 488 9961 9476 Pythium ultimum mitochondrion, complete genome blastn 50618 837 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium ultimum
19920359 19920359 PRJNA799842_P_NODE_144276_length_249_cov_1.750000_g142703_i0 PRJNA799842 144276 249 1.75 4.3575 Phytophthora pluvialis 1330343 SAR_Eukaryotes SAR_Eukaryotes 121 6.09e-23   NTclustered gi|2308292446|gb|OK574297.1| 1330343 g142703 i0 81.633 59.2449799196787 147 25 58 2 1 145 24494 24640 Phytophthora pluvialis voucher NZFS3000 mitochondrion, complete genome blastn 14752 121 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora pluvialis
20346190 20346190 PRJNA799842_P_NODE_93336_length_300_cov_1.625551_g91763_i0 PRJNA799842 93336 300 1.625551 4.876653 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 549 8.119999999999997e-152   NTclustered gi|51235482|gb|AY598628.1| 82932 g91763 i0 99.667 99.8433333333333 300 1 100 0 1 300 1155 856 Pythium arrhenomanes strain CBS 324.62 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 29953 549 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium arrhenomanes
21197493 21197493 PRJNA799842_P_NODE_50937_length_398_cov_1.313846_g49364_i0 PRJNA799842 50937 398 1.313846 5.22910708 Pythium monospermum 92964 SAR_Eukaryotes SAR_Eukaryotes 725 0   NTclustered gi|33520250|gb|AY273995.1| 92964 g49364 i0 99.497 97.0125628140703 398 2 100 0 1 398 52 449 Pythium monospermum large subunit ribosomal RNA gene, partial sequence blastn 38611 725 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium monospermum
25021415 25021415 PRJNA799842_P_NODE_39940_length_452_cov_1.588391_g38369_i0 PRJNA799842 39940 452 1.588391 7.17952732 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 828 0   NTclustered gi|325194423|emb|FR825253.1| 890382 g38369 i0 99.778 100.648230088496 451 1 99 0 2 452 889 439 Albugo laibachii Nc14, genomic contig CONTIG_1950_NC14_v4_1284_22758 blastn 45493 828 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
25445376 25445376 PRJNA799842_P_NODE_122400_length_264_cov_1.989529_g120827_i0 PRJNA799842 122400 264 1.989529 5.25235656 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 483 7.219999999999998e-132   NTclustered gi|51235482|gb|AY598628.1| 82932 g120827 i0 99.621 97.3863636363636 264 1 100 0 1 264 1357 1620 Pythium arrhenomanes strain CBS 324.62 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 25710 483 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium arrhenomanes

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;