RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA799842" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA799842 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
793846 793846 PRJNA799842_P_NODE_161421_length_246_cov_0.890173_g159848_i0 PRJNA799842 161421 246 0.890173 2.18982558 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 180 9.77e-41   NTclustered gi|470421637|ref|XM_004337366.1| 1257118 g159848 i0 79.92 1.01219512195122 249 46 100 2 1 246 1354 1107 Acanthamoeba castellanii str. Neff zinc finger, C3HC4 type (RING finger) domain containing protein (ACA1_275750), partial mRNA blastn 249 180 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
4622707 4622707 PRJNA799842_P_NODE_187904_length_241_cov_0.916667_g186331_i0 PRJNA799842 187904 241 0.916667 2.20916747 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 209 1.22e-49   NTclustered gi|470522062|ref|XM_004353928.1| 1257118 g186331 i0 82.573 1 241 38 99 4 1 239 398 160 Acanthamoeba castellanii str. Neff pyridoxamine 5'phosphate oxidase family superfamily protein (ACA1_170220), partial mRNA blastn 241 209 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
5897458 5897458 PRJNA799842_P_NODE_163805_length_246_cov_0.890173_g162232_i0 PRJNA799842 163805 246 0.890173 2.18982558 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 346 9.1e-91   NTclustered gi|470419730|ref|XM_004337175.1| 1257118 g162232 i0 92.276 26.9430894308943 246 16 100 2 1 246 139 381 Acanthamoeba castellanii str. Neff nucleoside diphosphate kinase 1, putative (ACA1_218640), partial mRNA blastn 6628 346 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
8447360 8447360 PRJNA799842_P_NODE_188247_length_241_cov_0.916667_g186674_i0 PRJNA799842 188247 241 0.916667 2.20916747 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 285 1.96e-72   NTclustered gi|470448994|ref|XM_004340172.1| 1257118 g186674 i0 88.017 1.00414937759336 242 27 100 2 1 241 2733 2493 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_369320), partial mRNA blastn 242 285 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22469822 22469822 PRJNA799842_P_NODE_103258_length_287_cov_1.079439_g101685_i0 PRJNA799842 103258 287 1.079439 3.09798993 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 370 6.45e-98   NTclustered gi|470375882|ref|XM_004333185.1| 1257118 g101685 i0 90.141 0.989547038327526 284 28 99 0 4 287 662 379 Acanthamoeba castellanii str. Neff ubiquitin domain containing protein (ACA1_389410), partial mRNA blastn 284 370 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
25020276 25020276 PRJNA799842_P_NODE_157440_length_247_cov_0.885057_g155867_i0 PRJNA799842 157440 247 0.885057 2.18609079 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 340 4.25e-89   NTclustered gi|470383355|ref|XM_004333895.1| 1257118 g155867 i0 91.498 2 247 21 100 0 1 247 1318 1564 Acanthamoeba castellanii str. Neff Lecithin:cholesterol acyltransferase (ACA1_399790), partial mRNA blastn 494 340 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;