RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA799842" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA799842 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7173061 7173061 PRJNA799842_P_NODE_37146_length_470_cov_2.314861_g35575_i0 PRJNA799842 37146 470 2.314861 10.8798467 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 850 0   NTclustered gi|2651357788|gb|PP174303.1| 41631 g35575 i0 99.36 67.136170212766 469 3 99 0 2 470 3982 3514 Colpoda sp. isolate CIL1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 31554 850 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
13547598 13547598 PRJNA799842_P_NODE_170831_length_244_cov_0.970760_g169258_i0 PRJNA799842 170831 244 0.97076 2.3686544 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 303 5.5e-78   NTclustered gi|829160170|ref|XM_001012263.3| 312017 g169258 i0 89.388 59.7663934426229 245 20 99 6 3 244 869 628 Tetrahymena thermophila SB210 heat shock 70 kDa protein partial mRNA blastn 14583 303 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
14822412 14822412 PRJNA799842_P_NODE_174852_length_244_cov_0.900585_g173279_i0 PRJNA799842 174852 244 0.900585 2.1974274 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|145504323|ref|XM_001438097.1| 5888 g173279 i0 100 0.118852459016393 29 0 12 0 76 104 643 671 Paramecium tetraurelia uncharacterized protein (GSPATT00007872001), partial mRNA blastn 29 54.7 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
19920553 19920553 PRJNA799842_P_NODE_155656_length_247_cov_0.885057_g154083_i0 PRJNA799842 155656 247 0.885057 2.18609079 Gruberia lanceolata 1978530 SAR_Eukaryotes SAR_Eukaryotes 169 2.1199999999999996e-37   NTclustered gi|1810665267|gb|MK301177.1| 1978530 g154083 i0 86.164 20.6558704453441 159 19 64 2 88 245 4117 3961 Gruberia lanceolata strain Gben1 mitochondrion blastn 5102 169 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Spirostomidae Gruberia Gruberia lanceolata
21195330 21195330 PRJNA799842_P_NODE_112857_length_276_cov_1.054187_g111284_i0 PRJNA799842 112857 276 1.054187 2.90955612 Sterkiella histriomuscorum 94289 SAR_Eukaryotes SAR_Eukaryotes 488 1.6299999999999995e-133   NTclustered gi|220966760|gb|FJ545743.1| 94289 g111284 i0 98.551 100.144927536232 276 4 100 0 1 276 5376 5651 Sterkiella histriomuscorum 17S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence; macronuclear blastn 27640 488 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum
21196718 21196718 PRJNA799842_P_NODE_187477_length_241_cov_0.916667_g185904_i0 PRJNA799842 187477 241 0.916667 2.20916747 Eudiplodinium maggii 47892 SAR_Eukaryotes SAR_Eukaryotes 226 1.2099999999999997e-54   NTclustered gi|92790165|emb|AJ965268.1| 47892 g185904 i0 83.75 131.165975103734 240 37 99 2 3 241 428 190 Eudiplodinium maggii partial mRNA for Polyubiqutin 1 (polyubiqutin 1 gene) blastn 31611 226 1 Eukaryota Sar   Ciliophora Litostomatea Entodiniomorphida Ophryoscolecidae Eudiplodinium Eudiplodinium maggii
23745633 23745633 PRJNA799842_P_NODE_111939_length_277_cov_1.127451_g110366_i0 PRJNA799842 111939 277 1.127451 3.12303927 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.025   NTclustered gi|829187266|ref|XM_001033288.2| 312017 g110366 i0 100 0.101083032490975 28 0 10 0 196 223 1584 1611 Tetrahymena thermophila SB210 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
24170735 24170735 PRJNA799842_P_NODE_21879_length_640_cov_1.144621_g20358_i0 PRJNA799842 21879 640 1.1446210000000001 7.3255744 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 793 0   NTclustered gi|10790|emb|X12767.1| 5908 g20358 i0 90.894 75.5609375 593 50 92 4 50 640 301 891 Tetrahymena pyriformis alpha-tubulin gene blastn 48359 798 0.993734335839599 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;