RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA799842" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA799842 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10147050 10147050 PRJNA799842_P_NODE_112268_length_276_cov_1.630542_g110695_i0 PRJNA799842 112268 276 1.630542 4.50029592 Fimbriimonas 1005038 Bacteria Bacteria 361 3.7099999999999996e-95   NTclustered gi|663071213|gb|CP007139.1| 661478 g110695 i0 90.217 600.18115942029 276 27 100 0 1 276 27541 27266 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 165650 361 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
10147970 10147970 PRJNA799842_P_NODE_58968_length_370_cov_1.720539_g57395_i0 PRJNA799842 58968 370 1.720539 6.3659943 Chthonomonas 1077265 Bacteria Bacteria 320 8.73e-83   NTclustered gi|526641997|ref|NR_103994.1| 454171 g57395 i0 82.574 42.3621621621622 373 56 100 8 1 370 1302 1668 Chthonomonas calidirosea strain T49 23S ribosomal RNA gene, complete sequence blastn 15674 320 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae Chthonomonas Chthonomonas calidirosea
17372908 17372908 PRJNA799842_P_NODE_25554_length_583_cov_1.562745_g24005_i0 PRJNA799842 25554 583 1.562745 9.11080335 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 741 0   NTclustered gi|2076449834|gb|CP075365.1| 2682144 g24005 i0 90.104 168.6243567753 576 50 98 7 1 573 1878945 1878374 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM2 chromosome blastn 98308 741 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;