RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA799842" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 10 ✖

bioproject 1

  • PRJNA799842 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
795090 795090 PRJNA799842_P_NODE_51781_length_395_cov_0.956522_g50208_i0 PRJNA799842 51781 395 0.956522 3.7782619 Tetradesmus distendus 113531 Plants Plants 680 0   NTclustered gi|2692951646|ref|NC_086753.1| 113531 g50208 i0 97.727 142.235443037975 396 8 100 1 1 395 81324 80929 Tetradesmus distendus strain FBCC-A1020 chloroplast, complete genome blastn 56183 680 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus distendus
3343854 3343854 PRJNA799842_P_NODE_107803_length_282_cov_0.870813_g106230_i0 PRJNA799842 107803 282 0.870813 2.45569266 Chlorosarcinopsis eremi 332213 Plants Plants 510 3.57e-140   NTclustered gi|1642525901|ref|NC_042250.1| 332213 g106230 i0 99.291 136.741134751773 282 2 100 0 1 282 132047 132328 Chlorosarcinopsis eremi culture UTEX:1186 chloroplast, complete genome blastn 38561 510 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlorosarcinales Chlorosarcinaceae Chlorosarcinopsis Chlorosarcinopsis eremi
3770254 3770254 PRJNA799842_P_NODE_111883_length_277_cov_1.132353_g110310_i0 PRJNA799842 111883 277 1.132353 3.13661781 Trebouxiophyceae 75966 Plants Plants 512 9.73e-141   NTclustered gi|723456786|ref|NC_025525.1| 3171 g110310 i0 100 104.924187725632 277 0 100 0 1 277 4374 4650 Myrmecia israelensis culture-collection UTEX:1181 chloroplast, complete genome blastn 29064 512 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia Myrmecia israelensis
7171626 7171626 PRJNA799842_P_NODE_133266_length_252_cov_1.720670_g131693_i0 PRJNA799842 133266 252 1.72067 4.3360884 Bracteacoccus aerius 50041 Plants Plants 52.8 0.023   NTclustered gi|1008861732|ref|NC_029675.1| 50041 g131693 i0 100 0.111111111111111 28 0 11 0 10 37 25208 25235 Bracteacoccus aerius strain UTEX 1250 chloroplast, complete genome blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Bracteacoccaceae Bracteacoccus Bracteacoccus aerius
12698108 12698108 PRJNA799842_P_NODE_10990_length_946_cov_1.617411_g9805_i0 PRJNA799842 10990 946 1.617411 15.30070806 Eukaryota 2759 Plants Plants 660 0   NTclustered gi|969822364|gb|KT950949.1| 3130 g9805 i0 80.457 94.6395348837209 875 161 92 10 51 920 2 871 Bryopsis plumosa actin mRNA, partial cds blastn 89529 665 0.992481203007519 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis plumosa
13548935 13548935 PRJNA799842_P_NODE_63251_length_358_cov_1.319298_g61678_i0 PRJNA799842 63251 358 1.319298 4.72308684 Myrmecia israelensis 3171 Plants Plants 662 0   NTclustered gi|723456786|ref|NC_025525.1| 3171 g61678 i0 100 121.645251396648 358 0 100 0 1 358 3044 2687 Myrmecia israelensis culture-collection UTEX:1181 chloroplast, complete genome blastn 43549 662 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia Myrmecia israelensis
14822837 14822837 PRJNA799842_P_NODE_24212_length_602_cov_1.625709_g22674_i0 PRJNA799842 24212 602 1.625709 9.78676818 Pleurastrum terricola 34116 Plants Plants 1112 0   NTclustered gi|153805558|ref|NC_009681.1| 34116 g22674 i0 100 136.586378737542 602 0 100 0 1 602 1424 823 Leptosira terrestris chloroplast, complete genome blastn 82225 1112 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Pleurastraceae Pleurastrum Pleurastrum terricola
17373089 17373089 PRJNA799842_P_NODE_33214_length_501_cov_1.077103_g31645_i0 PRJNA799842 33214 501 1.077103 5.39628603 Volvox carteri 3067 Plants Plants 156 3.63e-33   NTclustered gi|302841991|ref|XM_002952494.1| 3068 g31645 i0 90 23.6986027944112 120 12 24 0 1 120 2127 2246 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_75431), mRNA blastn 11873 156 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
20345168 20345168 PRJNA799842_P_NODE_139196_length_250_cov_1.774011_g137623_i0 PRJNA799842 139196 250 1.774011 4.4350275 Balticola 1328802 Plants Plants 350 7.17e-92   NTclustered gi|6120015|gb|AF183475.1| 51690 g137623 i0 92.032 99.436 251 17 100 3 1 250 1646 1398 Balticola zimbabwiensis strain UTEX LB 1758 28S ribosomal RNA gene, partial sequence blastn 24859 351 0.997150997150997 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Balticola Balticola zimbabwiensis
22470063 22470063 PRJNA799842_P_NODE_115778_length_272_cov_1.522613_g114205_i0 PRJNA799842 115778 272 1.522613 4.14150736 Pleurastrum terricola 34116 Plants Plants 492 1.24e-134   NTclustered gi|153805558|ref|NC_009681.1| 34116 g114205 i0 99.265 104.411764705882 272 2 100 0 1 272 131290 131561 Leptosira terrestris chloroplast, complete genome blastn 28400 492 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Pleurastraceae Pleurastrum Pleurastrum terricola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;