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contig_metadata

20 rows where analysis = "blastn", bioproject = "PRJNA799842" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 20 ✖

bioproject 1

  • PRJNA799842 · 20 ✖

analysis 1

  • blastn · 20 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
793846 793846 PRJNA799842_P_NODE_161421_length_246_cov_0.890173_g159848_i0 PRJNA799842 161421 246 0.890173 2.18982558 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 180 9.77e-41   NTclustered gi|470421637|ref|XM_004337366.1| 1257118 g159848 i0 79.92 1.01219512195122 249 46 100 2 1 246 1354 1107 Acanthamoeba castellanii str. Neff zinc finger, C3HC4 type (RING finger) domain containing protein (ACA1_275750), partial mRNA blastn 249 180 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
4622707 4622707 PRJNA799842_P_NODE_187904_length_241_cov_0.916667_g186331_i0 PRJNA799842 187904 241 0.916667 2.20916747 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 209 1.22e-49   NTclustered gi|470522062|ref|XM_004353928.1| 1257118 g186331 i0 82.573 1 241 38 99 4 1 239 398 160 Acanthamoeba castellanii str. Neff pyridoxamine 5'phosphate oxidase family superfamily protein (ACA1_170220), partial mRNA blastn 241 209 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
5896416 5896416 PRJNA799842_P_NODE_109705_length_279_cov_1.495146_g108132_i0 PRJNA799842 109705 279 1.495146 4.17145734 Amoebozoa sp. 1892891 Root_unresolved Root_unresolved 250 8.49e-62   NTclustered gi|2651357789|gb|PP174304.1| 1892891 g108132 i0 93.064 6.72043010752688 173 8 74 4 106 276 4053 3883 Amoebozoa sp. isolate 114_WLI small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1875 250 1 Eukaryota Amoebozoa             Amoebozoa sp.
5897458 5897458 PRJNA799842_P_NODE_163805_length_246_cov_0.890173_g162232_i0 PRJNA799842 163805 246 0.890173 2.18982558 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 346 9.1e-91   NTclustered gi|470419730|ref|XM_004337175.1| 1257118 g162232 i0 92.276 26.9430894308943 246 16 100 2 1 246 139 381 Acanthamoeba castellanii str. Neff nucleoside diphosphate kinase 1, putative (ACA1_218640), partial mRNA blastn 6628 346 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
8446516 8446516 PRJNA799842_P_NODE_142287_length_250_cov_0.870056_g140714_i0 PRJNA799842 142287 250 0.870056 2.17514 Entamoeba histolytica 5759 Evosea other_Eukaryota 169 2.15e-37   NTclustered gi|467633|emb|Z29969.1| 5759 g140714 i0 80.081 23.108 246 34 96 8 1 239 1970 2207 E.histolytica plasmid genes for ribosomal RNA and hemolysins HLY1, HLY5mc1 HLY5mc2 HLY4 blastn 5777 169 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
8447360 8447360 PRJNA799842_P_NODE_188247_length_241_cov_0.916667_g186674_i0 PRJNA799842 188247 241 0.916667 2.20916747 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 285 1.96e-72   NTclustered gi|470448994|ref|XM_004340172.1| 1257118 g186674 i0 88.017 1.00414937759336 242 27 100 2 1 241 2733 2493 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_369320), partial mRNA blastn 242 285 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13548109 13548109 PRJNA799842_P_NODE_25191_length_588_cov_2.415534_g23646_i0 PRJNA799842 25191 588 2.415534 14.20333992 Physarum cinereum 289951 Evosea other_Eukaryota 1074 0   NTclustered gi|374255699|emb|HE614599.1| 289951 g23646 i0 99.66 100.540816326531 588 1 100 1 1 588 1111 525 Physarum cinereum partial 18S rRNA gene, strain Idn-2 blastn 59118 1074 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum cinereum
14822729 14822729 PRJNA799842_P_NODE_19132_length_693_cov_2.441935_g17642_i0 PRJNA799842 19132 693 2.441935 16.92260955 Physarum polycephalum 5791 Evosea other_Eukaryota 678 0   NTclustered gi|3221|emb|V01159.1| 5791 g17642 i0 86.783 44.7575757575758 628 60 88 19 1 611 1576 2197 Physarum polycephalum gene encoding 5.8S rRNA and 26S rRNA blastn 31017 678 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
14822903 14822903 PRJNA799842_P_NODE_27492_length_558_cov_2.973196_g25936_i0 PRJNA799842 27492 558 2.973196 16.59043368 Polyschismium peyerimhoffii 2911783 Evosea other_Eukaryota 350 1.7400000000000002e-91   NTclustered gi|2161226355|gb|MZ313553.1| 2911783 g25936 i0 78.778 29.3584229390681 589 76 100 37 1 558 6953 6383 Polyschismium peyerimhoffii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 16382 350 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Polyschismium Polyschismium peyerimhoffii
14823224 14823224 PRJNA799842_P_NODE_41692_length_442_cov_1.005420_g40121_i0 PRJNA799842 41692 442 1.00542 4.4439564 Physarum cinereum 289951 Evosea other_Eukaryota 811 0   NTclustered gi|374255699|emb|HE614599.1| 289951 g40121 i0 99.774 91.0294117647059 442 1 100 0 1 442 510 69 Physarum cinereum partial 18S rRNA gene, strain Idn-2 blastn 40235 811 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum cinereum
16096940 16096940 PRJNA799842_P_NODE_21633_length_644_cov_1.886165_g20115_i0 PRJNA799842 21633 644 1.886165 12.1469026 Copromyxa laresi 1789826 Tubulinea other_Eukaryota 542 3.12e-149   NTclustered gi|1042160945|dbj|LC102279.1| 1789826 g20115 i0 98.371 3.91614906832298 307 5 48 0 337 643 1 307 Copromyxa sp. MK-2016 gene for elongation factor 2 alpha, partial cds, strain: ZEB1 blastn 2522 542 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa laresi
16097498 16097498 PRJNA799842_P_NODE_4653_length_1403_cov_15.173684_g3955_i0 PRJNA799842 4653 1403 15.173684 212.88678652 Copromyxa protea 931554 Tubulinea other_Eukaryota 1574 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g3955 i0 87.365 27.4041339985745 1393 150 98 16 11 1381 1389 1 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 38448 1574 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
16521413 16521413 PRJNA799842_P_NODE_111033_length_278_cov_1.126829_g109460_i0 PRJNA799842 111033 278 1.126829 3.13258462 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 54.7 0.007   NTclustered gi|330800430|ref|XM_003288192.1| 5786 g109460 i0 100 0.20863309352518 29 0 10 0 201 229 224 196 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_97960), mRNA blastn 58 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
17374310 17374310 PRJNA799842_P_NODE_89534_length_306_cov_1.592275_g87961_i0 PRJNA799842 89534 306 1.592275 4.8723615 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 566 8.239999999999998e-157   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g87961 i0 100 62.6993464052288 306 0 100 0 1 306 955 650 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 19186 566 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
21621735 21621735 PRJNA799842_P_NODE_75617_length_330_cov_1.509728_g74044_i0 PRJNA799842 75617 330 1.509728 4.9821024 Physarum 5790 Evosea other_Eukaryota 604 1.8999999999999996e-168   NTclustered gi|381139256|emb|HE655073.1| 289948 g74044 i0 99.697 52.4757575757576 330 1 100 0 1 330 1253 924 Physarum albescens partial 28S rRNA gene, isolate Fr-K2 blastn 17317 610 0.99016393442623 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum albescens
22469822 22469822 PRJNA799842_P_NODE_103258_length_287_cov_1.079439_g101685_i0 PRJNA799842 103258 287 1.079439 3.09798993 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 370 6.45e-98   NTclustered gi|470375882|ref|XM_004333185.1| 1257118 g101685 i0 90.141 0.989547038327526 284 28 99 0 4 287 662 379 Acanthamoeba castellanii str. Neff ubiquitin domain containing protein (ACA1_389410), partial mRNA blastn 284 370 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22472078 22472078 PRJNA799842_P_NODE_46278_length_418_cov_1.237681_g44705_i0 PRJNA799842 46278 418 1.237681 5.17350658 Hartmannella cantabrigiensis 239731 Tubulinea other_Eukaryota 662 0   NTclustered gi|33946358|gb|AY294158.1| 239731 g44705 i0 95.215 93.822966507177 418 20 100 0 1 418 1132 715 Hartmannella cantabrigiensis actin mRNA, complete cds blastn 39218 662 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Hartmannella Hartmannella cantabrigiensis
22472193 22472193 PRJNA799842_P_NODE_51578_length_395_cov_2.897516_g50005_i0 PRJNA799842 51578 395 2.897516 11.4451882 Fuligo septica 159720 Evosea other_Eukaryota 211 5.89e-50   NTclustered gi|37515398|emb|AJ584697.1| 159720 g50005 i0 94.203 1.33164556962025 138 8 35 0 233 370 14003 13866 Fuligo septica 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene, isolate NY-1 blastn 526 211 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
25020212 25020212 PRJNA799842_P_NODE_153760_length_248_cov_0.880000_g152187_i0 PRJNA799842 153760 248 0.88 2.1824 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.022   NTclustered gi|66823606|ref|XM_640066.1| 352472 g152187 i0 100 0.112903225806452 28 0 11 0 155 182 3513 3540 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0272368) mRNA, complete cds blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
25020276 25020276 PRJNA799842_P_NODE_157440_length_247_cov_0.885057_g155867_i0 PRJNA799842 157440 247 0.885057 2.18609079 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 340 4.25e-89   NTclustered gi|470383355|ref|XM_004333895.1| 1257118 g155867 i0 91.498 2 247 21 100 0 1 247 1318 1564 Acanthamoeba castellanii str. Neff Lecithin:cholesterol acyltransferase (ACA1_399790), partial mRNA blastn 494 340 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;