RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA798511" and tax_phylum = "Rotifera"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Rotifera · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA798511 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4618796 4618796 PRJNA798511_P_NODE_38944_length_430_cov_1.439776_g34682_i0 PRJNA798511 38944 430 1.439776 6.1910368 Brachionus angularis 396692 Rotifera other_Eukaryota 52.8 0.041   NTclustered gi|2029759104|gb|MW026556.1| 396692 g34682 i0 94.286 0.0813953488372093 35 1 8 1 4 38 4213 4180 Brachionus angularis ATP-binding cassette transporter Abca2 mRNA, complete cds blastn 35 52.8 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus angularis
10995138 10995138 PRJNA798511_P_NODE_84449_length_258_cov_0.902703_g80183_i0 PRJNA798511 84449 258 0.902703 2.32897374 Brachionus rubens 392764 Rotifera other_Eukaryota 97.1 1.07e-15   NTclustered gi|632795126|gb|KJ489417.1| 392764 g80183 i0 82.759 0.449612403100775 116 13 43 5 5 114 10516 10402 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 116 97.1 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
13543390 13543390 PRJNA798511_P_NODE_15151_length_1061_cov_11.049595_g11767_i0 PRJNA798511 15151 1061 11.049595 117.23620295 Brachionus rubens 392764 Rotifera other_Eukaryota 424 1.98e-113   NTclustered gi|1802791198|gb|MN256531.1| 392764 g11767 i0 81.973 36.7954759660697 527 70 49 21 540 1057 11280 11790 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 39040 424 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
22466663 22466663 PRJNA798511_P_NODE_100778_length_242_cov_1.366864_g96512_i0 PRJNA798511 100778 242 1.366864 3.30781088 Brachionus angularis 396692 Rotifera other_Eukaryota 108 4.59e-19   NTclustered gi|213959396|gb|FJ426630.1| 396692 g96512 i0 76.991 10.4917355371901 226 29 93 12 18 242 140 343 Brachionus angularis voucher S. H. Cheng 001 16S ribosomal RNA gene, partial sequence; mitochondrial blastn 2539 108 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus angularis
23743447 23743447 PRJNA798511_P_NODE_55999_length_331_cov_5.775194_g51733_i0 PRJNA798511 55999 331 5.775194 19.11589214 Brachionus urceolaris 204736 Rotifera other_Eukaryota 244 4.79e-60   NTclustered gi|213959403|gb|FJ426637.1| 204736 g51733 i0 81.672 62.1631419939577 311 41 92 14 29 331 3 305 Brachionus urceolaris voucher S. H. Cheng 008 16S ribosomal RNA gene, partial sequence; mitochondrial blastn 20576 244 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus urceolaris

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;