RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA798511" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA798511 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5893236 5893236 PRJNA798511_P_NODE_12165_length_1305_cov_3.624188_g9273_i0 PRJNA798511 12165 1305 3.624188 47.2956534 Chlamydomonas peterfii 28462 Plants Plants 54.7 0.037   NTclustered gi|952953456|gb|KT625006.1| 28462 g9273 i0 100 0.0222222222222222 29 0 2 0 36 64 196 224 Chlamydomonas peterfii clone contig00165 chloroplast, partial genome blastn 29 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas peterfii
8443565 8443565 PRJNA798511_P_NODE_45247_length_383_cov_1.603226_g40983_i0 PRJNA798511 45247 383 1.603226 6.14035558 Hydrodictyon reticulatum 3107 Plants Plants 54.7 0.01   NTclustered gi|1197510262|ref|NC_034655.1| 3107 g40983 i0 90.476 0.109660574412533 42 2 10 1 294 333 11454 11495 Hydrodictyon reticulatum voucher HAM0289 chloroplast, complete genome blastn 42 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Hydrodictyaceae Hydrodictyon Hydrodictyon reticulatum
10994337 10994337 PRJNA798511_P_NODE_36529_length_454_cov_1.207349_g32270_i0 PRJNA798511 36529 454 1.207349 5.48136446 Cephaleuros diffusus 1519597 Plants Plants 56.5 0.003   NTclustered gi|2692956661|ref|NC_086864.1| 1519597 g32270 i0 96.97 0.0726872246696035 33 1 7 0 338 370 147068 147036 Cephaleuros diffusus chloroplast, complete genome blastn 33 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Trentepohliales Trentepohliaceae Cephaleuros Cephaleuros diffusus
25016744 25016744 PRJNA798511_P_NODE_32060_length_508_cov_0.885057_g27810_i0 PRJNA798511 32060 508 0.885057 4.49608956 Eudorina sp. NIES-3984 1941220 Plants Plants 52.8 0.05   NTclustered gi|1477083104|gb|MH267732.1| 1941220 g27810 i0 100 0.0551181102362205 28 0 6 0 275 302 68668 68641 Eudorina sp. NIES-3984 plastid, complete genome blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Eudorina Eudorina sp. NIES-3984

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;