RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA797655" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA797655 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3769320 3769320 PRJNA797655_S_NODE_89043_length_257_cov_2.817757_g88438_i0 PRJNA797655 89043 257 2.817757 7.24163549 root 1 Root_unresolved Root_unresolved 464 2.5299999999999998e-126   NTclustered gi|2562786027|gb|CP120256.1| 197 g88438 i0 99.222 103.964980544747 257 2 100 0 1 257 1305139 1304883 Campylobacter jejuni strain PS_41_2021 chromosome, complete genome blastn 26719 464 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
9715458 9715458 PRJNA797655_S_NODE_30688_length_365_cov_2.208075_g30083_i0 PRJNA797655 30688 365 2.208075 8.05947375 Nitrosophilus labii 2706014 Bacteria Bacteria 52.8 0.035   NTclustered gi|1897228471|dbj|AP022826.1| 2706014 g30083 i0 100 0.0767123287671233 28 0 8 0 200 227 388915 388888 Nitrosophilus labii HRV44 DNA, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Nautiliales Nitratiruptoraceae Nitrosophilus Nitrosophilus labii
10992991 10992991 PRJNA797655_S_NODE_85289_length_261_cov_3.743119_g84684_i0 PRJNA797655 85289 261 3.743119 9.76954059 Campylobacter showae 204 Bacteria Bacteria 481 2.56e-131   NTclustered gi|1483583494|emb|LT631418.1| 204 g84684 i0 100 11.9348659003831 260 0 99 0 2 261 584401 584660 Campylobacter showae genome assembly, chromosome: I blastn 3115 481 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae
21188247 21188247 PRJNA797655_S_NODE_235017_length_164_cov_1.190083_g234412_i0 PRJNA797655 235017 164 1.190083 1.95173612 Campylobacter canadensis 449520 Bacteria Bacteria 52.8 0.014   NTclustered gi|1845963639|gb|CP035946.1| 449520 g234412 i0 100 0.170731707317073 28 0 17 0 10 37 1004690 1004717 Campylobacter canadensis strain LMG 24001 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter canadensis
23736472 23736472 PRJNA797655_S_NODE_167759_length_195_cov_2.210526_g167154_i0 PRJNA797655 167759 195 2.210526 4.3105257 Aliarcobacter cryaerophilus 28198 Bacteria Bacteria 292 9.12e-75   NTclustered gi|2696026618|gb|CP146528.1| 2933791 g167154 i0 97.647 30.3179487179487 170 4 87 0 26 195 2232200 2232369 Arcobacter cryaerophilus gv. pseudocryaerophilus strain Kiel 2759 chromosome, complete genome blastn 5912 292 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;