RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA797655" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA797655 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2060665 2060665 PRJNA797655_S_NODE_206322_length_176_cov_1.203008_g205717_i0 PRJNA797655 206322 176 1.203008 2.11729408 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 276 8.090000000000001e-70   NTclustered gi|2874254019|emb|OY970344.1| 412056 g205717 i0 94.915 58.0681818181818 177 8 100 1 1 176 735870 736046 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.c.3 genome assembly, chromosome: 1 blastn 10220 276 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
3333008 3333008 PRJNA797655_S_NODE_112663_length_234_cov_2.418848_g112058_i0 PRJNA797655 112663 234 2.418848 5.66010432 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 399 6.499999999999999e-107   NTclustered gi|2874254019|emb|OY970344.1| 412056 g112058 i0 97.447 96.0854700854701 235 5 100 1 1 234 737154 737388 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.c.3 genome assembly, chromosome: 1 blastn 22484 399 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
12268191 12268191 PRJNA797655_S_NODE_77830_length_270_cov_4.057269_g77225_i0 PRJNA797655 77830 270 4.057269 10.9546263 Candidatus Uabimicrobium helgolandensis 3095367 Bacteria Bacteria 54.7 0.007   NTclustered gi|2793194503|gb|CP165719.1| 3095367 g77225 i0 100 0.537037037037037 29 0 11 0 35 63 344505 344533 Candidatus Uabimicrobium helgolandensis strain HlEnr_7 chromosome blastn 145 54.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Candidatus Uabimicrobiia Candidatus Uabimicrobiales Candidatus Uabimicrobiaceae Candidatus Uabimicrobium Candidatus Uabimicrobium helgolandensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;