RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA797655" and tax_clade = "Bacteria candidate phyla"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA797655 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2060928 2060928 PRJNA797655_S_NODE_214982_length_172_cov_1.488372_g214377_i0 PRJNA797655 214982 172 1.488372 2.55999984 uncultured Poribacteria bacterium 265321 Bacteria Bacteria 52.8 0.014   NTclustered gi|2518551991|emb|OX638351.1| 265321 g214377 i0 100 0.162790697674419 28 0 16 0 144 171 2020899 2020926 MAG: uncultured Poribacteria bacterium isolate d4690918-7cf6-4b6d-bcb0-07eb3c50a363 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria Bacteria candidate phyla   Candidatus Poribacteria         uncultured Poribacteria bacterium
16084181 16084181 PRJNA797655_S_NODE_101953_length_244_cov_1.910448_g101348_i0 PRJNA797655 101953 244 1.910448 4.66149312 Candidatus Absconditicoccus praedator 2735562 Bacteria Bacteria 52.8 0.022   NTclustered gi|2160621446|gb|CP054059.1| 2735562 g101348 i0 96.875 0.131147540983607 32 0 13 1 195 225 277327 277296 Candidatus Absconditicoccus praedator strain M39-6 chromosome, complete genome blastn 32 52.8 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota   Candidatus Absconditabacterales Candidatus Absconditicoccaceae Candidatus Absconditicoccus Candidatus Absconditicoccus praedator

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;