RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA797475" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA797475 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
781276 781276 PRJNA797475_P_NODE_12501_length_302_cov_1.344978_g12402_i0 PRJNA797475 12501 302 1.344978 4.06183356 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 213 1.22e-50   NTclustered gi|698791735|ref|XM_009830598.1| 112090 g12402 i0 80.405 19.953642384106 296 45 95 11 12 299 168 458 Aphanomyces astaci malate dehydrogenase, NAD-dependent mRNA blastn 6026 213 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
9709795 9709795 PRJNA797475_P_NODE_4628_length_464_cov_2.140665_g4530_i0 PRJNA797475 4628 464 2.140665 9.9326856 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 239 3.22e-58   NTclustered gi|2794883434|ref|XM_067881304.1| 164328 g4530 i0 77.751 13.2801724137931 418 73 88 14 47 454 630 223 Phytophthora ramorum 60S ribosomal protein L7 (KRP23_1099), partial mRNA blastn 6162 239 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
10145502 10145502 PRJNA797475_P_NODE_9708_length_335_cov_4.179389_g9609_i0 PRJNA797475 9708 335 4.179389 14.00095315 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 143 1.82e-29   NTclustered gi|2795051631|ref|XM_067944120.1| 4785 g9609 i0 81.461 40.4955223880597 178 29 53 4 152 327 368 193 Phytophthora cinnamomi 60S ribosomal protein L18a (IUM83_19091), partial mRNA blastn 13566 143 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
14810005 14810005 PRJNA797475_P_NODE_26612_length_245_cov_0.895349_g26513_i0 PRJNA797475 26612 245 0.895349 2.19360505 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 67.6 7.9e-7   NTclustered gi|2795017041|ref|XM_067930511.1| 4785 g26513 i0 84.848 0.387755102040816 66 10 27 0 180 245 949 884 Phytophthora cinnamomi papain-like cysteine protease C1 (IUM83_06316), partial mRNA blastn 95 67.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
17359786 17359786 PRJNA797475_P_NODE_21354_length_251_cov_0.865169_g21255_i0 PRJNA797475 21354 251 0.865169 2.17157419 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 169 2.1599999999999996e-37   NTclustered gi|2795037266|ref|XM_067927329.1| 4785 g21255 i0 79.216 3.04382470119522 255 43 99 10 2 251 402 153 Phytophthora cinnamomi 60S ribosomal protein L7 (IUM83_03338), partial mRNA blastn 764 169 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
22894596 22894596 PRJNA797475_P_NODE_6958_length_385_cov_2.256410_g6859_i0 PRJNA797475 6958 385 2.25641 8.6871785 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 226 2.0499999999999995e-54   NTclustered gi|2795032696|ref|XM_067933028.1| 4785 g6859 i0 80.903 73.7532467532468 288 53 75 2 41 327 311 25 Phytophthora cinnamomi cytochrome c (IUM83_08641), partial mRNA blastn 28395 226 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;