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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA797475" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA797475 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3332470 3332470 PRJNA797475_P_NODE_23303_length_249_cov_0.875000_g23204_i0 PRJNA797475 23303 249 0.875 2.17875 Caenorhabditis elegans 6239 Nematoda Nematoda 460 3.16e-125   NTclustered gi|687865928|emb|LK927994.1| 6239 g23204 i0 100 3 249 0 100 0 1 249 59271 59023 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000393 blastn 747 460 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
8434544 8434544 PRJNA797475_P_NODE_23327_length_249_cov_0.875000_g23228_i0 PRJNA797475 23327 249 0.875 2.17875 Sudhausia aristotokia 1357959 Nematoda Nematoda 122 1.69e-23   NTclustered gi|675118807|gb|KJ877278.1| 1357959 g23228 i0 79.255 52.0120481927711 188 30 73 9 38 220 1421 1604 Sudhausia aristotokia strain RS9011 28S ribosomal RNA gene, partial sequence blastn 12951 122 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Sudhausia Sudhausia aristotokia
14809930 14809930 PRJNA797475_P_NODE_21672_length_251_cov_0.865169_g21573_i0 PRJNA797475 21672 251 0.865169 2.17157419 Caenorhabditis elegans 6239 Nematoda Nematoda 459 1.1499999999999996e-124   NTclustered gi|351060592|emb|FO080992.1| 6239 g21573 i0 99.602 3 251 1 100 0 1 251 10369 10619 Caenorhabditis elegans YAC Y119C1B, complete sequence blastn 753 459 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
16083952 16083952 PRJNA797475_P_NODE_22733_length_250_cov_0.870056_g22634_i0 PRJNA797475 22733 250 0.870056 2.17514 Caenorhabditis elegans 6239 Nematoda Nematoda 462 8.83e-126   NTclustered gi|687865721|emb|LK927708.1| 6239 g22634 i0 100 47.104 250 0 100 0 1 250 369 120 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000155 blastn 11776 462 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
16083976 16083976 PRJNA797475_P_NODE_24533_length_248_cov_0.880000_g24434_i0 PRJNA797475 24533 248 0.88 2.1824 Caenorhabditis elegans 6239 Nematoda Nematoda 459 1.13e-124   NTclustered gi|1972262700|ref|NM_065509.9| 6239 g24434 i0 100 6.62096774193548 248 0 100 0 1 248 514 761 Caenorhabditis elegans Small ribosomal subunit protein eS1 (rps-3A), mRNA blastn 1642 459 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
19908176 19908176 PRJNA797475_P_NODE_19276_length_261_cov_2.632979_g19177_i0 PRJNA797475 19276 261 2.632979 6.87207519 Caenorhabditis elegans 6239 Nematoda Nematoda 475 1.1899999999999999e-129   NTclustered gi|1972230171|ref|NM_001392490.1| 6239 g19177 i0 99.615 3.04980842911877 260 1 99 0 1 260 261 2 Caenorhabditis elegans Small integral membrane protein 15 (C48B6.10), mRNA blastn 796 475 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
19908239 19908239 PRJNA797475_P_NODE_23916_length_248_cov_1.320000_g23817_i0 PRJNA797475 23916 248 1.32 3.2736 Caenorhabditis elegans 6239 Nematoda Nematoda 459 1.13e-124   NTclustered gi|1734338622|ref|NM_076012.6| 6239 g23817 i0 100 96.5564516129032 248 0 100 0 1 248 371 124 Caenorhabditis elegans Large ribosomal subunit protein uL5B (rpl-11.2), mRNA blastn 23946 459 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
22458546 22458546 PRJNA797475_P_NODE_23258_length_249_cov_0.875000_g23159_i0 PRJNA797475 23258 249 0.875 2.17875 Caenorhabditis elegans 6239 Nematoda Nematoda 460 3.16e-125   NTclustered gi|1734326521|ref|NM_066550.4| 6239 g23159 i0 100 2.97991967871486 249 0 100 0 1 249 697 449 Caenorhabditis elegans Malectin domain-containing protein (F44E2.10), partial mRNA blastn 742 460 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
23734237 23734237 PRJNA797475_P_NODE_25439_length_247_cov_0.885057_g25340_i0 PRJNA797475 25439 247 0.885057 2.18609079 Caenorhabditis elegans 6239 Nematoda Nematoda 457 4.05e-124   NTclustered gi|687865583|emb|LK927625.1| 6239 g25340 i0 100 4 247 0 100 0 1 247 87779 88025 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000086 blastn 988 457 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
25007781 25007781 PRJNA797475_P_NODE_20880_length_253_cov_1.422222_g20781_i0 PRJNA797475 20880 253 1.422222 3.59822166 Caenorhabditis elegans 6239 Nematoda Nematoda 462 8.95e-126   NTclustered gi|1972236089|ref|NM_001383766.2| 6239 g20781 i0 99.605 8.09090909090909 253 1 100 0 1 253 288 36 Caenorhabditis elegans Small ribosomal subunit protein eS26 (rps-26), mRNA blastn 2047 462 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;