RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA797475" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA797475 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2057137 2057137 PRJNA797475_P_NODE_10942_length_319_cov_2.947154_g10843_i0 PRJNA797475 10942 319 2.947154 9.40142126 Polychytrium aggregatum 110093 Fungi Fungi 226 1.6699999999999998e-54   NTclustered gi|2432159776|ref|XM_053111801.1| 110093 g10843 i0 81.185 62.1253918495298 287 49 90 4 29 314 409 127 Polychytrium aggregatum ribosomal protein S8e/ribosomal biogenesis NSA2 (BJ171DRAFT_514033), mRNA blastn 19818 226 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
21183897 21183897 PRJNA797475_P_NODE_26277_length_246_cov_0.890173_g26178_i0 PRJNA797475 26277 246 0.890173 2.18982558 Polychytrium aggregatum 110093 Fungi Fungi 60.2 1.33e-4   NTclustered gi|2432131527|ref|XM_053109326.1| 110093 g26178 i0 100 0.130081300813008 32 0 13 0 166 197 445 414 Polychytrium aggregatum putative 60S ribosomal protein L22 (BJ171DRAFT_487870), mRNA blastn 32 60.2 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
22458537 22458537 PRJNA797475_P_NODE_22958_length_249_cov_1.750000_g22859_i0 PRJNA797475 22958 249 1.75 4.3575 Polychytrium aggregatum 110093 Fungi Fungi 139 1.68e-28   NTclustered gi|2432150000|ref|XM_053114178.1| 110093 g22859 i0 77.459 3.11244979919679 244 47 96 7 1 240 378 139 Polychytrium aggregatum ribosomal protein S2, flavodoxin-like domain-containing protein (BJ171DRAFT_582387), partial mRNA blastn 775 139 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;