RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA797475" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA797475 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2057322 2057322 PRJNA797475_P_NODE_26742_length_245_cov_0.895349_g26643_i0 PRJNA797475 26742 245 0.895349 2.19360505 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 453 5.1900000000000006e-123   NTclustered gi|258597813|ref|XM_001348557.2| 36329 g26643 i0 100 4.01224489795918 245 0 100 0 1 245 16095 15851 Plasmodium falciparum 3D7 conserved Plasmodium protein, unknown function (PF3D7_1444100), partial mRNA blastn 983 453 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
5045109 5045109 PRJNA797475_P_NODE_4944_length_450_cov_1.978780_g4846_i0 PRJNA797475 4944 450 1.97878 8.90451 Toxoplasma 5810 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.044   NTclustered gi|260233916|dbj|AK318321.1| 5811 g4846 i0 100 0.186666666666667 28 0 6 0 215 242 509 536 Toxoplasma gondii cDNA, clone: XTG07019.2, full cDNA, XTG Sugano cDNA library blastn 84 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
16083978 16083978 PRJNA797475_P_NODE_24773_length_247_cov_1.356322_g24674_i0 PRJNA797475 24773 247 1.356322 3.35011534 Cystoisospora suis 483139 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.022   NTclustered gi|2795613622|ref|XM_068060841.1| 483139 g24674 i0 100 0.11336032388664 28 0 11 0 20 47 3225 3252 Cystoisospora suis uncharacterized protein (CSUI_000608), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Cystoisospora Cystoisospora suis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;