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contig_metadata

27 rows where analysis = "blastn", bioproject = "PRJNA797475" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 27 ✖

bioproject 1

  • PRJNA797475 · 27 ✖

analysis 1

  • blastn · 27 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
781309 781309 PRJNA797475_P_NODE_1621_length_753_cov_1.661765_g1531_i0 PRJNA797475 1621 753 1.661765 12.51309045 Chlamydomonas incerta 51695 Plants Plants 448 8.239999999999999e-121   NTclustered gi|74272606|gb|DQ122868.1| 51695 g1531 i0 84.498 68.5245683930943 458 66 60 5 69 523 34 489 Chlamydomonas incerta 40S ribosomal protein S3 mRNA, complete cds blastn 51599 448 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
3332456 3332456 PRJNA797475_P_NODE_22703_length_250_cov_0.870056_g22604_i0 PRJNA797475 22703 250 0.870056 2.17514 Chlamydomonas reinhardtii 3055 Plants Plants 462 8.83e-126   NTclustered gi|2082267250|ref|XM_043070997.1| 3055 g22604 i0 100 1 250 0 100 0 1 250 388 637 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_16g661638v5), mRNA blastn 250 462 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
3332520 3332520 PRJNA797475_P_NODE_27063_length_245_cov_0.895349_g26964_i0 PRJNA797475 27063 245 0.895349 2.19360505 Chlamydomonas reinhardtii 3055 Plants Plants 453 5.1900000000000006e-123   NTclustered gi|2082261178|ref|XM_001696920.2| 3055 g26964 i0 100 22.9387755102041 245 0 100 0 1 245 728 484 Chlamydomonas reinhardtii ribosomal protein L12 (CHLRE_12g528750v5), mRNA blastn 5620 453 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
4609706 4609706 PRJNA797475_P_NODE_20204_length_256_cov_2.524590_g20105_i0 PRJNA797475 20204 256 2.52459 6.4629504 Chlamydomonas noctigama 28456 Plants Plants 473 4.189999999999999e-129   NTclustered gi|17028277|gb|L43353.1|CRECPRRNLD 28456 g20105 i0 100 132.80078125 256 0 100 0 1 256 278 23 Chlamydomonas geitleri chloroplast large subunit ribosomal RNA (rrnL) gene blastn 33997 473 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas noctigama
4609878 4609878 PRJNA797475_P_NODE_7244_length_379_cov_0.911765_g7145_i0 PRJNA797475 7244 379 0.911765 3.45558935 Chlamydomonas reinhardtii 3055 Plants Plants 701 0   NTclustered gi|4689367|gb|AF135791.1|AF135791 3055 g7145 i0 100 3.96569920844327 379 0 100 0 1 379 1905 2283 Chlamydomonas reinhardtii photosystem I subunit F precursor (psaF) gene, complete cds blastn 1503 701 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
5884899 5884899 PRJNA797475_P_NODE_19465_length_260_cov_2.508021_g19366_i0 PRJNA797475 19465 260 2.508021 6.5208546 Chlamydomonas reinhardtii 3055 Plants Plants 281 2.78e-71   NTclustered gi|2082262214|ref|XM_001693945.2| 3055 g19366 i0 88.987 81.5692307692308 227 25 87 0 1 227 337 111 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_12g549550v5), mRNA blastn 21208 281 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
5884943 5884943 PRJNA797475_P_NODE_23185_length_249_cov_0.875000_g23086_i0 PRJNA797475 23185 249 0.875 2.17875 Chlamydomonas reinhardtii 3055 Plants Plants 460 3.16e-125   NTclustered gi|2082256175|ref|XM_001702525.2| 3055 g23086 i0 100 52.4779116465863 249 0 100 0 1 249 514 266 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_10g424100v5), mRNA blastn 13067 460 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
7159833 7159833 PRJNA797475_P_NODE_26646_length_245_cov_0.895349_g26547_i0 PRJNA797475 26646 245 0.895349 2.19360505 Chlamydomonas reinhardtii 3055 Plants Plants 305 1.54e-78   NTclustered gi|2082264070|ref|XM_043069712.1| 3055 g26547 i0 95.833 6.42857142857143 192 3 78 1 54 245 3532 3718 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_13g588453v5), mRNA blastn 1575 305 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
8434439 8434439 PRJNA797475_P_NODE_14407_length_287_cov_1.079439_g14308_i0 PRJNA797475 14407 287 1.079439 3.09798993 Chlamydomonas reinhardtii 3055 Plants Plants 488 1.7099999999999998e-133   NTclustered gi|2082256557|ref|XM_001702433.2| 3055 g14308 i0 100 3.81184668989547 264 0 92 0 24 287 1056 793 Chlamydomonas reinhardtii ribosomal protein Sa (CHLRE_10g432800v5), mRNA blastn 1094 488 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
9709676 9709676 PRJNA797475_P_NODE_24048_length_248_cov_0.880000_g23949_i0 PRJNA797475 24048 248 0.88 2.1824 Chlamydomonas reinhardtii 3055 Plants Plants 459 1.13e-124   NTclustered gi|2082258184|ref|XM_001701325.2| 3055 g23949 i0 100 3.00403225806452 248 0 100 0 1 248 1024 777 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_11g467569v5), mRNA blastn 745 459 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
10985388 10985388 PRJNA797475_P_NODE_22209_length_250_cov_1.305085_g22110_i0 PRJNA797475 22209 250 1.305085 3.2627125 Chlamydomonas reinhardtii 3055 Plants Plants 462 8.83e-126   NTclustered gi|2082257373|ref|XM_001698467.2| 3055 g22110 i0 100 1 250 0 100 0 1 250 1480 1729 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_10g452050v5), mRNA blastn 250 462 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
10985398 10985398 PRJNA797475_P_NODE_23069_length_249_cov_1.312500_g22970_i0 PRJNA797475 23069 249 1.3125 3.268125 Polytomella sp. Pringsheim 198.80 37502 Plants Plants 172 1.66e-38   NTclustered gi|402244316|emb|FR686759.1| 37502 g22970 i0 81.221 3.57028112449799 213 40 86 0 33 245 1159 947 Polytomella sp. Pringsheim 198.80 mRNA for 40S ribosomal protein L3 (rpl3 gene) blastn 889 172 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella sp. Pringsheim 198.80
10985407 10985407 PRJNA797475_P_NODE_23749_length_249_cov_0.875000_g23650_i0 PRJNA797475 23749 249 0.875 2.17875 Chlamydomonas reinhardtii 3055 Plants Plants 457 4.09e-124   NTclustered gi|2082235962|ref|XM_001689819.2| 3055 g23650 i0 100 2.79919678714859 247 0 99 0 1 247 1818 1572 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g010900v5), mRNA blastn 697 457 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
13535011 13535011 PRJNA797475_P_NODE_16891_length_274_cov_1.149254_g16792_i0 PRJNA797475 16891 274 1.149254 3.14895596 Chlamydomonas reinhardtii 3055 Plants Plants 507 4.47e-139   NTclustered gi|238534981|gb|GQ176399.1| 3055 g16792 i0 100 8.66423357664234 274 0 100 0 1 274 198 471 Chlamydomonas reinhardtii clone CNB22 molecular marker mRNA sequence blastn 2374 507 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
14809864 14809864 PRJNA797475_P_NODE_15412_length_281_cov_1.519231_g15313_i0 PRJNA797475 15412 281 1.519231 4.26903911 Chlamydomonas sp. UWO 241 1653778 Plants Plants 401 2.2299999999999988e-107   NTclustered gi|822624806|gb|KP313859.1| 1653778 g15313 i0 92.527 70.932384341637 281 20 100 1 1 281 6373 6094 Chlamydomonas sp. UWO 241 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 19932 401 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. UWO 241
16083803 16083803 PRJNA797475_P_NODE_10213_length_329_cov_1.015625_g10114_i0 PRJNA797475 10213 329 1.015625 3.34140625 Chlamydomonas reinhardtii 3055 Plants Plants 608 1.4599999999999995e-169   NTclustered gi|2082237194|ref|XM_001689623.2| 3055 g10114 i0 100 1.48024316109422 329 0 100 0 1 329 390 718 Chlamydomonas reinhardtii ribosomal protein L26 (CHLRE_01g040000v5), mRNA blastn 487 608 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
16083820 16083820 PRJNA797475_P_NODE_12033_length_307_cov_2.217949_g11934_i0 PRJNA797475 12033 307 2.217949 6.80910343 Monoraphidium neglectum 145388 Plants Plants 311 4.28e-80   NTclustered gi|926791444|ref|XM_014048742.1| 145388 g11934 i0 85.294 109.928338762215 306 40 99 3 3 307 2853 2552 Monoraphidium neglectum adenosylhomocysteinase mRNA blastn 33748 311 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
17359707 17359707 PRJNA797475_P_NODE_13634_length_291_cov_1.412844_g13535_i0 PRJNA797475 13634 291 1.412844 4.11137604 Chlorella variabilis 554065 Plants Plants 300 8.72e-77   NTclustered gi|552844675|ref|XM_005851082.1| 554065 g13535 i0 85.223 95.2783505154639 291 43 100 0 1 291 93 383 Chlorella variabilis alpha-tubulin (CHLNCDRAFT_33793) mRNA, complete cds blastn 27726 300 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
17359840 17359840 PRJNA797475_P_NODE_25194_length_247_cov_0.885057_g25095_i0 PRJNA797475 25194 247 0.885057 2.18609079 Chlamydomonas reinhardtii 3055 Plants Plants 457 4.05e-124   NTclustered gi|18159|emb|X13826.1| 3055 g25095 i0 100 3 247 0 100 0 1 247 1421 1175 C.reinhardtii psb1 mRNA for OEE1 protein of photosystem II (oxygen-evolving enhancer protein) blastn 741 457 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
17359915 17359915 PRJNA797475_P_NODE_29934_length_241_cov_0.916667_g29835_i0 PRJNA797475 29934 241 0.916667 2.20916747 Chlamydomonas reinhardtii 3055 Plants Plants 446 8.519999999999999e-121   NTclustered gi|63095241|gb|AY946347.1| 3055 g29835 i0 100 2.99170124481328 241 0 100 0 1 241 3319 3559 Chlamydomonas reinhardtii low photochemical bleaching 1 protein (LPB1) mRNA, complete cds blastn 721 446 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
19908365 19908365 PRJNA797475_P_NODE_5276_length_437_cov_3.717033_g5178_i0 PRJNA797475 5276 437 3.717033 16.24343421 Auxenochlorella protothecoides 3075 Plants Plants 259 2.32e-64   NTclustered gi|760444762|ref|XM_011401148.1| 3075 g5178 i0 79.177 69.8192219679634 389 69 88 12 23 405 383 1 Auxenochlorella protothecoides 40S ribosomal protein S16 partial mRNA blastn 30511 259 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
21183856 21183856 PRJNA797475_P_NODE_23357_length_249_cov_0.875000_g23258_i0 PRJNA797475 23357 249 0.875 2.17875 Chlamydomonas reinhardtii 3055 Plants Plants 460 3.16e-125   NTclustered gi|2082247599|ref|XM_001696391.2| 3055 g23258 i0 100 1 249 0 100 0 1 249 176 424 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g276001v5), mRNA blastn 249 460 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
22458614 22458614 PRJNA797475_P_NODE_27998_length_244_cov_0.900585_g27899_i0 PRJNA797475 27998 244 0.900585 2.1974274 Chlamydomonas reinhardtii 3055 Plants Plants 451 1.86e-122   NTclustered gi|2082237132|ref|XM_001689609.2| 3055 g27899 i0 100 2.14754098360656 244 0 100 0 1 244 1379 1136 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g038400v5), mRNA blastn 524 451 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
22458661 22458661 PRJNA797475_P_NODE_4098_length_492_cov_1.281623_g4000_i0 PRJNA797475 4098 492 1.281623 6.30558516 Monoraphidium neglectum 145388 Plants Plants 237 1.24e-57   NTclustered gi|926782177|ref|XM_014044109.1| 145388 g4000 i0 78.919 9.86585365853658 370 63 74 11 6 369 246 606 Monoraphidium neglectum 60S ribosomal protein L7a mRNA blastn 4854 237 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
22458683 22458683 PRJNA797475_P_NODE_7038_length_384_cov_0.990354_g6939_i0 PRJNA797475 7038 384 0.990354 3.80295936 Chlamydomonas noctigama 28456 Plants Plants 710 0   NTclustered gi|17028277|gb|L43353.1|CRECPRRNLD 28456 g6939 i0 100 140.690104166667 384 0 100 0 1 384 786 1169 Chlamydomonas geitleri chloroplast large subunit ribosomal RNA (rrnL) gene blastn 54025 710 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas noctigama
25007687 25007687 PRJNA797475_P_NODE_11460_length_313_cov_1.683333_g11361_i0 PRJNA797475 11460 313 1.683333 5.26883229 Monoraphidium neglectum 145388 Plants Plants 163 1.3e-35   NTclustered gi|926773763|ref|XM_014039902.1| 145388 g11361 i0 77.152 5.94568690095847 302 55 94 12 16 310 1 295 Monoraphidium neglectum 60S ribosomal protein L19-2 mRNA blastn 1861 163 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
25007976 25007976 PRJNA797475_P_NODE_8860_length_348_cov_2.240000_g8761_i0 PRJNA797475 8860 348 2.24 7.7952 Chlamydomonas reinhardtii 3055 Plants Plants 307 6.37e-79   NTclustered gi|224593220|gb|FJ715708.1| 3055 g8761 i0 86.861 38.683908045977 274 36 79 0 64 337 6 279 Chlamydomonas reinhardtii strain CC1690 translation elongation factor-like protein mRNA, partial cds blastn 13462 307 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;