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contig_metadata

15 rows where analysis = "blastn", bioproject = "PRJNA796753" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 15 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA796753 · 15 ✖

analysis 1

  • blastn · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2056609 2056609 PRJNA796753_P_NODE_30702_length_277_cov_8.200980_g30390_i0 PRJNA796753 30702 277 8.20098 22.7167146 Caenorhabditis remanei 31234 Nematoda Nematoda 78.7 4.2e-10   NTclustered gi|2445352248|ref|XM_053723719.1| 31234 g30390 i0 94.118 0.646209386281588 51 3 18 0 208 258 282 232 Caenorhabditis remanei uncharacterized protein (GCK72_002963), partial mRNA blastn 179 78.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
2492120 2492120 PRJNA796753_P_NODE_34042_length_267_cov_1.190722_g33730_i0 PRJNA796753 34042 267 1.190722 3.17922774 root 1 Root_unresolved Root_unresolved 52.8 0.024   NTclustered gi|687865587|emb|LK927641.1| 6239 g33730 i0 100 2.2247191011236 28 0 10 0 207 234 57673 57700 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000013 blastn 594 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
6320693 6320693 PRJNA796753_P_NODE_26265_length_293_cov_1.563636_g25953_i0 PRJNA796753 26265 293 1.563636 4.58145348 Opisthokonta 33154 Nematoda Nematoda 222 1.96e-53   NTclustered gi|268571800|ref|XM_002641106.1| 6238 g25953 i0 82.609 56.5529010238908 253 42 86 2 38 289 309 58 Caenorhabditis briggsae Protein CBR-ARF-1.2 (Cbr-arf-1.2), partial mRNA blastn 16570 222 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
9708828 9708828 PRJNA796753_P_NODE_15148_length_366_cov_3.058020_g14836_i0 PRJNA796753 15148 366 3.05802 11.1923532 Brugia malayi 6279 Nematoda Nematoda 350 1.1e-91   NTclustered gi|2082298039|ref|XM_043075942.1| 6279 g14836 i0 87.879 29.5792349726776 297 36 81 0 65 361 1 297 Brugia malayi Uncharacterized protein (Bma-tbb-4), partial mRNA blastn 10826 350 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
9708901 9708901 PRJNA796753_P_NODE_28088_length_286_cov_1.727700_g27776_i0 PRJNA796753 28088 286 1.7277 4.941222 Caenorhabditis briggsae 6238 Nematoda Nematoda 191 5.37e-44   NTclustered gi|2158424922|ref|XM_045237347.1| 6238 g27776 i0 79.371 49.6083916083916 286 47 98 9 3 282 2249 1970 Caenorhabditis briggsae Protein CBR-EFT-2 (Cbr-eft-2), partial mRNA blastn 14188 191 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
9708905 9708905 PRJNA796753_P_NODE_28828_length_284_cov_1.298578_g28516_i0 PRJNA796753 28828 284 1.298578 3.68796152 Caenorhabditis briggsae 6238 Nematoda Nematoda 130 1.18e-25   NTclustered gi|2158425779|ref|XM_045244164.1| 6238 g28516 i0 80.952 9.60915492957746 168 28 58 4 112 277 1665 1830 Caenorhabditis briggsae Protein CBR-PGP-2 (Cbr-pgp-2), partial mRNA blastn 2729 130 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
10984852 10984852 PRJNA796753_P_NODE_8869_length_462_cov_1.557841_g8558_i0 PRJNA796753 8869 462 1.557841 7.19722542 Caenorhabditis elegans 6239 Nematoda Nematoda 285 4.0599999999999995e-72   NTclustered gi|687865574|emb|LK927573.1| 6239 g8558 i0 82.371 67.1926406926407 329 56 71 2 14 341 82954 83281 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000040 blastn 31043 285 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
12696283 12696283 PRJNA796753_P_NODE_17570_length_346_cov_1.029304_g17258_i0 PRJNA796753 17570 346 1.029304 3.56139184 Metazoa 33208 Nematoda Nematoda 56.5 0.003   NTclustered gi|339264662|ref|XM_003366495.1| 6334 g17258 i0 100 0.34393063583815 30 0 9 0 115 144 1397 1368 Trichinella spiralis zinc finger protein (Tsp_13826) mRNA, complete cds blastn 119 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
13534349 13534349 PRJNA796753_P_NODE_2931_length_772_cov_2.419170_g2656_i0 PRJNA796753 2931 772 2.41917 18.6759924 Strongyloides ratti 34506 Nematoda Nematoda 444 1.0899999999999994e-119   NTclustered gi|1376147725|ref|XM_024654528.1| 34506 g2656 i0 83.974 51.3121761658031 468 69 60 6 1 465 923 1387 Strongyloides ratti ATP synthase subunit alpha, mitochondrial (SRAE_2000334600), partial mRNA blastn 39613 444 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
22457773 22457773 PRJNA796753_P_NODE_19238_length_334_cov_2.137931_g18926_i0 PRJNA796753 19238 334 2.137931 7.14068954 Myctolaimus sp. RS5442 669110 Nematoda Nematoda 198 3.82e-46   NTclustered gi|256709120|gb|GQ422212.1| 669110 g18926 i0 77.812 11.7814371257485 329 67 98 6 9 334 272 597 Myctolaimus sp. RS5442 large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 3935 198 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Cylindrocorporidae Myctolaimus Myctolaimus sp. RS5442
22457810 22457810 PRJNA796753_P_NODE_24758_length_301_cov_4.807018_g24446_i0 PRJNA796753 24758 301 4.807018 14.46912418 Strongyloides ratti 34506 Nematoda Nematoda 315 3.239999999999999e-81   NTclustered gi|1376147859|ref|XM_024654603.1| 34506 g24446 i0 86.054 209.249169435216 294 39 97 2 1 293 683 391 Strongyloides ratti Polyubiquitin-C (SRAE_2000341300), partial mRNA blastn 62984 315 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
22457876 22457876 PRJNA796753_P_NODE_38858_length_251_cov_0.865169_g38546_i0 PRJNA796753 38858 251 0.865169 2.17157419 Oigolaimella sp. VS-2014 1538701 Nematoda Nematoda 132 2.84e-26   NTclustered gi|675119001|gb|KJ877380.1| 1538701 g38546 i0 88.182 0.924302788844621 110 13 44 0 1 110 287 396 Oigolaimella sp. VS-2014 strain RS9010 large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 232 132 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Oigolaimella Oigolaimella sp. VS-2014
22457952 22457952 PRJNA796753_P_NODE_48478_length_245_cov_0.895349_g48166_i0 PRJNA796753 48478 245 0.895349 2.19360505 Trichinella spiralis 6334 Nematoda Nematoda 241 4.400000000000001e-59   NTclustered gi|339244268|ref|XM_003378012.1| 6334 g48166 i0 84.426 96.3918367346939 244 38 99 0 2 245 463 220 Trichinella spiralis histone H3 (Tsp_02260) mRNA, complete cds blastn 23616 241 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
22894277 22894277 PRJNA796753_P_NODE_17438_length_347_cov_1.124088_g17126_i0 PRJNA796753 17438 347 1.124088 3.90058536 Metazoa 33208 Nematoda Nematoda 158 6.77e-34   NTclustered gi|339246888|ref|XM_003375030.1| 6334 g17126 i0 79.464 61.0374639769452 224 44 64 2 124 346 868 646 Trichinella spiralis putative LIM domain protein (Tsp_04264) mRNA, complete cds blastn 21180 158 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
25007020 25007020 PRJNA796753_P_NODE_14860_length_369_cov_4.834459_g14548_i0 PRJNA796753 14860 369 4.834459 17.83915371 Caenorhabditis remanei 31234 Nematoda Nematoda 176 1.99e-39   NTclustered gi|2445378119|ref|XM_003100380.2| 31234 g14548 i0 85.294 30.5094850948509 170 25 46 0 116 285 194 25 Caenorhabditis remanei uncharacterized protein (GCK72_016568), partial mRNA blastn 11258 176 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;