RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA796753" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA796753 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5884110 5884110 PRJNA796753_P_NODE_14665_length_371_cov_3.070470_g14353_i0 PRJNA796753 14665 371 3.07047 11.3914437 uncultured Dehalococcoidia bacterium 498747 Bacteria Bacteria 56.5 0.003   NTclustered gi|2531976022|emb|OY282355.1| 498747 g14353 i0 96.97 0.175202156334232 33 1 9 0 142 174 1254471 1254503 MAG: uncultured Dehalococcoidia bacterium genome assembly, chromosome: 1 blastn 65 56.5 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       uncultured Dehalococcoidia bacterium
16083392 16083392 PRJNA796753_P_NODE_9213_length_455_cov_0.913613_g8901_i0 PRJNA796753 9213 455 0.913613 4.15693915 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 52.8 0.044   NTclustered gi|2621701415|emb|OY760135.1| 2026734 g8901 i0 100 0.0615384615384615 28 0 6 0 151 178 294554 294527 MAG: Dehalococcoidia bacterium isolate 28bbf505-4b8f-49ae-a3a4-61061bf7583c genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
19907492 19907492 PRJNA796753_P_NODE_30936_length_277_cov_1.132353_g30624_i0 PRJNA796753 30936 277 1.132353 3.13661781 Ktedonobacterales bacterium 2306968 Bacteria Bacteria 52.8 0.025   NTclustered gi|2513924934|gb|CP126532.1| 2306968 g30624 i0 100 0.101083032490975 28 0 10 0 48 75 4868495 4868522 MAG: Ktedonobacterales bacterium isolate bin_006 chromosome, complete genome blastn 28 52.8 1 Bacteria   Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales     Ktedonobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;