RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA796753" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA796753 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1216630 1216630 PRJNA796753_P_NODE_40461_length_250_cov_0.870056_g40149_i0 PRJNA796753 40461 250 0.870056 2.17514 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 231 2.7099999999999996e-56   NTclustered gi|27734344|gb|AY099127.1| 91324 g40149 i0 87.5 108.588 200 25 80 0 25 224 201 2 Lotharella globosa isolate pub2 polyubiquitin gene, partial cds blastn 27147 233 0.991416309012876 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Lotharella Lotharella globosa
2056546 2056546 PRJNA796753_P_NODE_21182_length_322_cov_1.232932_g20870_i0 PRJNA796753 21182 322 1.232932 3.97004104 Gymnophrys sp. ATCC 50923 646463 SAR_Eukaryotes SAR_Eukaryotes 298 3.52e-76   NTclustered gi|238617604|gb|FJ973379.1| 646463 g20870 i0 88.031 66.0341614906832 259 22 80 7 5 261 948 697 Gymnophrys sp. ATCC 50923 28S ribosomal RNA gene, partial sequence blastn 21263 298 1 Eukaryota Sar   Cercozoa       Gymnophrys Gymnophrys sp. ATCC 50923
10984635 10984635 PRJNA796753_P_NODE_27869_length_287_cov_1.387850_g27557_i0 PRJNA796753 27869 287 1.38785 3.9831295 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 531 2.799999999999999e-146   NTclustered gi|238617602|gb|FJ973377.1| 188950 g27557 i0 100 61.0278745644599 287 0 100 0 1 287 1949 1663 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 17515 531 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
18632258 18632258 PRJNA796753_P_NODE_47995_length_245_cov_0.895349_g47683_i0 PRJNA796753 47995 245 0.895349 2.19360505 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 453 5.1900000000000006e-123   NTclustered gi|238617602|gb|FJ973377.1| 188950 g47683 i0 100 31.4408163265306 245 0 100 0 1 245 2393 2149 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 7703 453 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;