RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA796753" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA796753 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8869982 8869982 PRJNA796753_P_NODE_8107_length_481_cov_1.588235_g7796_i0 PRJNA796753 8107 481 1.588235 7.63941035 Acidobacteriaceae 204434 Bacteria Bacteria 784 0   NTclustered gi|2304905231|gb|CP073696.1| 2051959 g7796 i0 96.05 126.288981288981 481 19 100 0 1 481 3198488 3198968 Tunturiibacter lichenicola strain DSM 104462 chromosome, complete genome blastn 60745 787 0.996188055908513 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Tunturiibacter Tunturiibacter lichenicola
13970721 13970721 PRJNA796753_P_NODE_5331_length_584_cov_2.722114_g5024_i0 PRJNA796753 5331 584 2.722114 15.89714576 Acidobacteriaceae 204434 Bacteria Bacteria 994 0   NTclustered gi|2304905231|gb|CP073696.1| 2051959 g5024 i0 97.432 103.683219178082 584 14 100 1 1 584 3199477 3198895 Tunturiibacter lichenicola strain DSM 104462 chromosome, complete genome blastn 60551 994 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Tunturiibacter Tunturiibacter lichenicola
23733563 23733563 PRJNA796753_P_NODE_4719_length_619_cov_2.056777_g4415_i0 PRJNA796753 4719 619 2.056777 12.73144963 Edaphobacter paludis 3035702 Bacteria Bacteria 1083 0   NTclustered gi|2737763816|gb|CP121194.1| 3035702 g4415 i0 98.223 102.507269789984 619 11 100 0 1 619 661637 661019 Edaphobacter paludis strain DSM 109919 chromosome, complete genome blastn 63452 1083 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Edaphobacter Edaphobacter paludis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;