RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA796753" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 8 ✖

bioproject 1

  • PRJNA796753 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
780760 780760 PRJNA796753_P_NODE_46221_length_246_cov_1.335260_g45909_i0 PRJNA796753 46221 246 1.33526 3.2847396 Deinococcus aquaticus 328692 Bacteria Bacteria 298 2.5799999999999998e-76   NTclustered gi|2444120906|gb|CP115165.1| 328692 g45909 i0 89.024 1 246 19 100 5 1 246 1021969 1022206 Deinococcus aquaticus strain PB-314 chromosome, complete genome blastn 246 298 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus aquaticus
5044876 5044876 PRJNA796753_P_NODE_48504_length_245_cov_0.895349_g48192_i0 PRJNA796753 48504 245 0.895349 2.19360505 root 1 Root_unresolved Root_unresolved 453 5.1900000000000006e-123   NTclustered gi|161513486|emb|AM292065.1| 1299 g48192 i0 100 103.751020408163 245 0 100 0 1 245 422 666 Deinococcus radiodurans partial 16S rRNA gene, isolate zf-69-II blastn 25419 453 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiodurans
8433849 8433849 PRJNA796753_P_NODE_39527_length_251_cov_0.865169_g39215_i0 PRJNA796753 39527 251 0.865169 2.17157419 Deinococcus sonorensis 309891 Bacteria Bacteria 54.7 0.006   NTclustered gi|2745307249|gb|CP158299.1| 694439 g39215 i0 100 0.115537848605578 29 0 12 0 117 145 1890798 1890770 Deinococcus sonorensis KR-87 chromosome, complete genome blastn 29 54.7 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sonorensis
11420571 11420571 PRJNA796753_P_NODE_33929_length_267_cov_1.536082_g33617_i0 PRJNA796753 33929 267 1.536082 4.10133894 Allomeiothermus 2935559 Bacteria Bacteria 483 7.31e-132   NTclustered gi|470486339|ref|NR_076751.1| 52022 g33617 i0 99.251 150.76404494382 267 2 100 0 1 267 2427 2161 Meiothermus silvanus strain DSM 9946 23S ribosomal RNA gene, complete sequence blastn 40254 483 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Allomeiothermus Allomeiothermus silvanus
13534277 13534277 PRJNA796753_P_NODE_19211_length_335_cov_0.828244_g18899_i0 PRJNA796753 19211 335 0.828244 2.7746174 Thermus sp. CCB_US3_UF1 1111069 Bacteria Bacteria 52.8 0.032   NTclustered gi|359289533|gb|CP003126.1| 1111069 g18899 i0 100 0.0835820895522388 28 0 8 0 170 197 887445 887472 Thermus sp. CCB_US3_UF1, complete genome blastn 28 52.8 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus sp. CCB_US3_UF1
18632243 18632243 PRJNA796753_P_NODE_44975_length_247_cov_0.885057_g44663_i0 PRJNA796753 44975 247 0.885057 2.18609079 Fretibacterium fastidiosum 651822 Bacteria Bacteria 302 2.01e-77   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g44663 i0 88.889 41.1943319838057 252 19 100 8 1 247 68720 68967 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 10175 302 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
23733482 23733482 PRJNA796753_P_NODE_33259_length_269_cov_1.571429_g32947_i0 PRJNA796753 33259 269 1.571429 4.22714401 Deinococcus yunweiensis 367282 Bacteria Bacteria 442 1.2499999999999994e-119   NTclustered gi|2890653062|gb|CP177252.1| 367282 g32947 i0 96.283 9.04460966542751 269 10 100 0 1 269 2795483 2795751 Deinococcus yunweiensis strain KCTC 3955 chromosome, complete genome blastn 2433 442 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus yunweiensis
24168402 24168402 PRJNA796753_P_NODE_9039_length_458_cov_2.436364_g8727_i0 PRJNA796753 9039 458 2.436364 11.15854712 Allomeiothermus 2935559 Bacteria Bacteria 835 0   NTclustered gi|470486339|ref|NR_076751.1| 52022 g8727 i0 99.563 148.109170305677 458 2 100 0 1 458 1267 810 Meiothermus silvanus strain DSM 9946 23S ribosomal RNA gene, complete sequence blastn 67834 835 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Allomeiothermus Allomeiothermus silvanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;