RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA796753" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA796753 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15245201 15245201 PRJNA796753_P_NODE_6212_length_543_cov_2.165957_g5904_i0 PRJNA796753 6212 543 2.165957 11.76114651 Methanothrix 2222 Archaea Archaea 987 0   NTclustered gi|507148322|ref|NR_103125.1| 2223 g5904 i0 99.448 16.427255985267 543 3 100 0 1 543 726 184 Methanosaeta concilii strain GP6 23S ribosomal RNA gene, complete sequence blastn 8920 987 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix soehngenii
16083221 16083221 PRJNA796753_P_NODE_32053_length_273_cov_1.540000_g31741_i0 PRJNA796753 32053 273 1.54 4.2042 Haloferax sp. YSSS75 3388564 Archaea Archaea 58.4 5.39e-4   NTclustered gi|2890410414|gb|CP177206.1| 3388564 g31741 i0 97.059 0.124542124542125 34 1 12 0 90 123 360722 360755 Haloferax sp. YSSS75 chromosome, complete genome blastn 34 58.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax sp. YSSS75
19907570 19907570 PRJNA796753_P_NODE_416_length_1624_cov_2.987750_g333_i0 PRJNA796753 416 1624 2.98775 48.52106 Halorutilales archaeon Cl-col2-1 3242703 Archaea Archaea 54.7 0.046   NTclustered gi|2801083086|gb|CP169074.1| 3242703 g333 i0 100 0.0178571428571429 29 0 2 0 202 230 912412 912384 Halorutilales archaeon Cl-col2-1 chromosome, complete genome blastn 29 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halorutilales     Halorutilales archaeon Cl-col2-1
22894298 22894298 PRJNA796753_P_NODE_25478_length_297_cov_2.790179_g25166_i0 PRJNA796753 25478 297 2.790179 8.28683163 root 1 Root_unresolved Root_unresolved 278 4.18e-70   NTclustered gi|436492|gb|U00707.1|PSU00707 33866 g25166 i0 100 7.53872053872054 150 0 100 0 1 150 3650 3799 Pyrococcus sp. Deep Vent DNA polymerase precursor gene, complete cds blastn 2239 278 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;