RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA796753" and tax_clade = "Metamonada"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Metamonada · 6 ✖

bioproject 1

  • PRJNA796753 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2056625 2056625 PRJNA796753_P_NODE_33942_length_267_cov_1.489691_g33630_i0 PRJNA796753 33942 267 1.489691 3.97747497 Monocercomonoides exilis 2049356 Preaxostyla other_Eukaryota 54.7 0.007   NTclustered gi|2794946634|ref|XM_067865789.1| 2049356 g33630 i0 90.476 0.157303370786517 42 2 15 2 207 247 1048 1088 Monocercomonoides exilis putative Poly-adenylate binding protein, unique domain (MONOS_13107), partial mRNA blastn 42 54.7 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis
12260289 12260289 PRJNA796753_P_NODE_4490_length_634_cov_2.443850_g4187_i0 PRJNA796753 4490 634 2.44385 15.494009 Monocercomonoides exilis 2049356 Preaxostyla other_Eukaryota 60.2 3.76e-4   NTclustered gi|2794970009|ref|XM_067877330.1| 2049356 g4187 i0 88.235 0.0804416403785489 51 4 8 2 145 193 3253 3203 Monocercomonoides exilis DNA repair endonuclease XPF (MONOS_7037), partial mRNA blastn 51 60.2 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis
17359012 17359012 PRJNA796753_P_NODE_22314_length_315_cov_1.590909_g22002_i0 PRJNA796753 22314 315 1.590909 5.01136335 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 52.8 0.029   NTclustered gi|123436956|ref|XM_001309279.1| 412133 g22002 i0 100 0.0888888888888889 28 0 9 0 59 86 676 703 Trichomonas vaginalis G3 Cilia- and flagella-associated protein 20/CFAP20DC family (TVAGG3_0545320), partial mRNA blastn 28 52.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
17359044 17359044 PRJNA796753_P_NODE_28194_length_286_cov_1.366197_g27882_i0 PRJNA796753 28194 286 1.366197 3.90732342 Monocercomonoides exilis 2049356 Preaxostyla other_Eukaryota 56.5 0.002   NTclustered gi|2794977840|ref|XM_067865860.1| 2049356 g27882 i0 100 0.409090909090909 30 0 10 0 85 114 6061 6032 Monocercomonoides exilis DNA-directed RNA polymerase large subunit (MONOS_1318), mRNA blastn 117 56.5 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis
21183127 21183127 PRJNA796753_P_NODE_25297_length_299_cov_0.783186_g24985_i0 PRJNA796753 25297 299 0.783186 2.34172614 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 52.8 0.028   NTclustered gi|2806455214|ref|XM_068502236.1| 1144522 g24985 i0 100 0.0936454849498328 28 0 9 0 30 57 415 388 Tritrichomonas foetus leucine-rich repeat-containing protein 23-like protein (TRFO_21865), partial mRNA blastn 28 52.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
22457960 22457960 PRJNA796753_P_NODE_49958_length_244_cov_0.900585_g49646_i0 PRJNA796753 49958 244 0.900585 2.1974274 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 54.7 0.006   NTclustered gi|2794865072|ref|XM_067915707.1| 135588 g49646 i0 100 0.118852459016393 29 0 12 0 79 107 245 217 Histomonas meleagridis uncharacterized protein (GO595_002762), partial mRNA blastn 29 54.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;