RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA796639" and tax_phylum = "Bacillota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bacillota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA796639 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9708761 9708761 PRJNA796639_P_NODE_6228_length_248_cov_0.880000_g6103_i0 PRJNA796639 6228 248 0.88 2.1824 uncultured Eubacteriales bacterium 172733 Bacteria Bacteria 340 4.27e-89   NTclustered gi|2729058706|emb|OZ007006.1| 172733 g6103 i0 91.498 8.96774193548387 247 21 99 0 1 247 7078 7324 MAG: uncultured Eubacteriales bacterium isolate metabat2_pooled_hifiasm.126 MAG genome assembly, chromosome: 1 blastn 2224 340 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales     uncultured Eubacteriales bacterium
12260021 12260021 PRJNA796639_P_NODE_4810_length_268_cov_1.579487_g4685_i0 PRJNA796639 4810 268 1.579487 4.23302516 Apilactobacillus apisilvae 2923364 Bacteria Bacteria 54.7 0.007   NTclustered gi|2239972674|gb|CP093362.1| 2923364 g4685 i0 100 0.108208955223881 29 0 11 0 72 100 96647 96619 Apilactobacillus apisilvae strain SG5_A10 chromosome, complete genome blastn 29 54.7 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Apilactobacillus Apilactobacillus apisilvae
12696259 12696259 PRJNA796639_P_NODE_7830_length_241_cov_0.916667_g7705_i0 PRJNA796639 7830 241 0.916667 2.20916747 Peribacillus 2675229 Bacteria Bacteria 440 3.959999999999999e-119   NTclustered gi|1906925978|gb|CP050509.1| 421767 g7705 i0 99.585 1139.9377593361 241 1 100 0 1 241 5138452 5138692 Peribacillus butanolivorans strain KJ40 chromosome, complete genome blastn 274725 440 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Peribacillus Peribacillus butanolivorans
24168233 24168233 PRJNA796639_P_NODE_5659_length_251_cov_0.865169_g5534_i0 PRJNA796639 5659 251 0.865169 2.17157419 Lactiplantibacillus 2767842 Bacteria Bacteria 464 2.47e-126   NTclustered gi|2739944818|emb|OZ061355.1| 1589 g5534 i0 100 480.358565737052 251 0 100 0 1 251 1279560 1279310 Lactiplantibacillus pentosus isolate Lactiplantibacillus pentosus CNRZ1547 genome assembly, chromosome: 1 blastn 120570 464 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus pentosus
25006969 25006969 PRJNA796639_P_NODE_6600_length_247_cov_0.885057_g6475_i0 PRJNA796639 6600 247 0.885057 2.18609079 Enterococcus faecalis 1351 Bacteria Bacteria 457 4.05e-124   NTclustered gi|1963785894|emb|LR962464.1| 1351 g6475 i0 100 100 247 0 100 0 1 247 2123226 2122980 Enterococcus faecalis isolate 28157_4#317 genome assembly, chromosome: 1 blastn 24700 457 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;