RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA795983" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA795983 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4608682 4608682 PRJNA795983_S_NODE_784_length_1033_cov_3.650000_g721_i0 PRJNA795983 784 1033 3.65 37.7045 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 1157 0   NTclustered gi|1369885|gb|L78441.1|SCM14332R 6183 g721 i0 91.349 14.1926427879961 867 44 82 13 12 856 858 1 Schistosoma mansoni 14-3-3-2 mRNA, 3' end of cds blastn 14661 1157 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
9708517 9708517 PRJNA795983_S_NODE_6988_length_443_cov_4.143243_g6863_i0 PRJNA795983 6988 443 4.143243 18.35456649 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 730 0   NTclustered gi|68479954|gb|DQ076149.1| 6182 g6863 i0 96.804 0.988713318284424 438 13 99 1 2 439 449 13 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 438 730 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
10144981 10144981 PRJNA795983_S_NODE_15328_length_335_cov_1.564885_g15203_i0 PRJNA795983 15328 335 1.564885 5.24236475 Metazoa 33208 Platyhelminthes Platyhelminthes 243 1.75e-59   NTclustered gi|359318420|gb|JN968463.2| 6161 g15203 i0 80.061 25.1970149253731 326 65 97 0 3 328 1606 1281 Dugesia japonica glucose-regulated protein 78 (grp78) mRNA, complete cds blastn 8441 243 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Dugesia Dugesia japonica
14808706 14808706 PRJNA795983_S_NODE_31412_length_263_cov_1.721053_g31287_i0 PRJNA795983 31412 263 1.721053 4.52636939 Schmidtea mediterranea 79327 Platyhelminthes Platyhelminthes 220 6.22e-53   NTclustered gi|2029882162|gb|MT411562.1| 79327 g31287 i0 84.375 51.8326996197719 224 35 85 0 38 261 496 273 Schmidtea mediterranea BIP-1 (bip-1) mRNA, partial cds blastn 13632 220 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Schmidtea Schmidtea mediterranea
16082508 16082508 PRJNA795983_S_NODE_1833_length_746_cov_4.548291_g1734_i0 PRJNA795983 1833 746 4.548291 33.93025086 Schistosoma turkestanicum 1163369 Platyhelminthes Platyhelminthes 656 0   NTclustered gi|66732686|gb|DQ017265.1| 1163369 g1734 i0 83.764 89.0187667560322 696 109 93 4 52 745 1200 507 Orientobilharzia turkestanicum actin mRNA, complete cds blastn 66408 656 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma turkestanicum
22457402 22457402 PRJNA795983_S_NODE_4018_length_546_cov_1.959831_g3896_i0 PRJNA795983 4018 546 1.959831 10.70067726 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 409 2.7699999999999997e-109   NTclustered gi|226478901|emb|FN317215.1| 6182 g3896 i0 81.653 48.029304029304 496 87 90 3 50 543 58 551 Schistosoma japonicum isolate Anhui full length mRNA clone SJFCE0797|FSE_080_96_H12, complete sequence blastn 26224 409 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
22894140 22894140 PRJNA795983_S_NODE_5558_length_481_cov_4.909314_g5433_i0 PRJNA795983 5558 481 4.909314 23.61380034 Metazoa 33208 Platyhelminthes Platyhelminthes 394 6.76e-105   NTclustered gi|21308066|gb|AY067433.1| 79327 g5433 i0 83.61 88.2661122661123 421 67 87 2 59 478 1 420 Schmidtea mediterranea unknown mRNA sequence blastn 42456 394 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Schmidtea Schmidtea mediterranea

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;