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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA795983" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA795983 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4608482 4608482 PRJNA795983_S_NODE_27504_length_276_cov_1.354680_g27379_i0 PRJNA795983 27504 276 1.35468 3.7389168 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 274 4.98e-69   NTclustered gi|675168842|ref|XM_008895058.1| 761204 g27379 i0 85.496 21.8115942028986 262 38 95 0 1 262 270 531 Phytophthora parasitica INRA-310 guanine nucleotide-binding protein subunit beta-like protein mRNA blastn 6020 274 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
6320509 6320509 PRJNA795983_S_NODE_16425_length_328_cov_1.082353_g16300_i0 PRJNA795983 16425 328 1.082353 3.55011784 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 209 1.73e-49   NTclustered gi|59894163|gb|AY729864.1| 74557 g16300 i0 79.861 58.5213414634146 288 56 88 2 2 288 1021 1307 Thraustotheca clavata heat shock protein 90 gene, partial cds blastn 19195 211 0.990521327014218 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
8433067 8433067 PRJNA795983_S_NODE_15567_length_333_cov_2.123077_g15442_i0 PRJNA795983 15567 333 2.123077 7.06984641 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 189 2.2899999999999998e-43   NTclustered gi|673025997|ref|XM_008868738.1| 157072 g15442 i0 80.156 34.8228228228228 257 47 77 2 6 260 456 202 Aphanomyces invadans 40S ribosomal protein S20 mRNA blastn 11596 189 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
12259749 12259749 PRJNA795983_S_NODE_42930_length_241_cov_0.916667_g42805_i0 PRJNA795983 42930 241 0.916667 2.20916747 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 226 1.2099999999999997e-54   NTclustered gi|669139111|ref|XM_008606902.1| 1156394 g42805 i0 84.188 43.298755186722 234 35 97 2 9 241 847 615 Saprolegnia diclina VS20 ATP-dependent RNA helicase eIF4A mRNA blastn 10435 226 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
12259830 12259830 PRJNA795983_S_NODE_9650_length_393_cov_2.243750_g9525_i0 PRJNA795983 9650 393 2.24375 8.8179375 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 263 1.6000000000000004e-65   NTclustered gi|673042664|ref|XM_008877071.1| 157072 g9525 i0 82.45 40.8320610687023 302 51 77 2 93 393 492 192 Aphanomyces invadans ubiquitin-40S ribosomal protein S27a mRNA blastn 16047 263 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
13533814 13533814 PRJNA795983_S_NODE_35851_length_251_cov_1.151685_g35726_i0 PRJNA795983 35851 251 1.151685 2.89072935 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.023   NTclustered gi|187468407|emb|CU855855.1| 123356 g35726 i0 100 0.111553784860558 28 0 11 0 115 142 107949 107976 H.parasitica DNA sequence from clone HpEmoy2-17E12, complete sequence blastn 28 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
16082648 16082648 PRJNA795983_S_NODE_31493_length_263_cov_1.484211_g31368_i0 PRJNA795983 31493 263 1.484211 3.90347493 Plectospira myriandra 100863 SAR_Eukaryotes SAR_Eukaryotes 187 6.309999999999998e-43   NTclustered gi|59894157|gb|AY729861.1| 100863 g31368 i0 80.478 5.71102661596958 251 43 94 4 1 248 1001 754 Plectospira myriandra heat shock protein 90 gene, partial cds blastn 1502 187 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Plectospira Plectospira myriandra
16519378 16519378 PRJNA795983_S_NODE_14093_length_344_cov_2.601476_g13968_i0 PRJNA795983 14093 344 2.601476 8.94907744 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 178 5.15e-40   NTclustered gi|813142340|ref|XM_012343869.1| 695850 g13968 i0 77.558 20.8401162790698 303 63 88 4 39 340 310 608 Saprolegnia parasitica CBS 223.65 40S ribosomal protein S6 mRNA blastn 7169 178 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;