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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA795983" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA795983 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4608593 4608593 PRJNA795983_S_NODE_38904_length_246_cov_1.763006_g38779_i0 PRJNA795983 38904 246 1.763006 4.33699476 Strongyloides papillosus 174720 Nematoda Nematoda 185 2.1e-42   NTclustered gi|690018930|emb|LM526223.1| 174720 g38779 i0 85.246 76.7967479674797 183 23 74 4 64 244 9904 9724 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000575 blastn 18892 185 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
4608634 4608634 PRJNA795983_S_NODE_44544_length_227_cov_2.987013_g44419_i0 PRJNA795983 44544 227 2.987013 6.78051951 Brugia malayi 6279 Nematoda Nematoda 237 5.199999999999999e-58   NTclustered gi|2082297892|ref|XM_043075899.1| 6279 g44419 i0 85.714 74.6387665198238 224 32 99 0 4 227 908 685 Brugia malayi Heat shock 70 kDa protein C precursor, putative (Bm13661), partial mRNA blastn 16943 237 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
14808707 14808707 PRJNA795983_S_NODE_31672_length_262_cov_2.164021_g31547_i0 PRJNA795983 31672 262 2.164021 5.66973502 Strongyloides ratti 34506 Nematoda Nematoda 193 1.35e-44   NTclustered gi|1376146275|ref|XM_024653703.1| 34506 g31547 i0 82.174 9.61832061068702 230 35 87 5 26 252 712 938 Strongyloides ratti Bifunctional glutamate/proline--tRNA ligase (SRAE_2000261400), partial mRNA blastn 2520 193 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
14808737 14808737 PRJNA795983_S_NODE_35192_length_252_cov_2.374302_g35067_i0 PRJNA795983 35192 252 2.374302 5.98324104 Strongyloides ratti 34506 Nematoda Nematoda 259 1.25e-64   NTclustered gi|1376147725|ref|XM_024654528.1| 34506 g35067 i0 87.556 85.2222222222222 225 27 89 1 28 252 1154 931 Strongyloides ratti ATP synthase subunit alpha, mitochondrial (SRAE_2000334600), partial mRNA blastn 21476 259 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
19906824 19906824 PRJNA795983_S_NODE_21756_length_299_cov_1.296460_g21631_i0 PRJNA795983 21756 299 1.29646 3.8764154 Strongyloides papillosus 174720 Nematoda Nematoda 237 7.15e-58   NTclustered gi|687022644|emb|LM525558.1| 174720 g21631 i0 83.465 59.5451505016722 254 42 85 0 44 297 232772 232519 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000004 blastn 17804 237 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
19907088 19907088 PRJNA795983_S_NODE_7276_length_436_cov_1.870523_g7151_i0 PRJNA795983 7276 436 1.870523 8.15548028 Pristionchus sp. 15 RS5229 452809 Nematoda Nematoda 193 2.38e-44   NTclustered gi|150984457|gb|EF634871.1| 452809 g7151 i0 77.848 21.2798165137615 316 66 72 3 119 432 329 16 Pristionchus sp. 15 RS5229 small subunit ribosomal protein 8 (rps-8) mRNA, partial cds blastn 9278 193 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 15 RS5229
19907103 19907103 PRJNA795983_S_NODE_9456_length_396_cov_2.424149_g9331_i0 PRJNA795983 9456 396 2.424149 9.59963004 Strongyloides ratti 34506 Nematoda Nematoda 364 4.289999999999999e-96   NTclustered gi|1376148845|ref|XM_024642710.1| 34506 g9331 i0 84.595 94.7575757575758 370 54 93 3 24 391 1316 948 Strongyloides ratti Tubulin beta-2A chain (SRAE_2000390300), partial mRNA blastn 37524 364 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
25006365 25006365 PRJNA795983_S_NODE_11060_length_375_cov_1.529801_g10935_i0 PRJNA795983 11060 375 1.529801 5.73675375 Strongyloides ratti 34506 Nematoda Nematoda 202 3.35e-47   NTclustered gi|1376136451|ref|XM_024648309.1| 34506 g10935 i0 77.311 46.8586666666667 357 71 94 10 18 371 725 376 Strongyloides ratti Enolase (SRAE_1000136300), partial mRNA blastn 17572 202 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
25006465 25006465 PRJNA795983_S_NODE_21600_length_299_cov_3.907080_g21475_i0 PRJNA795983 21600 299 3.90708 11.6821692 Caenorhabditis briggsae 6238 Nematoda Nematoda 250 9.19e-62   NTclustered gi|268537031|ref|XM_002633606.1| 6238 g21475 i0 87.5 66.314381270903 216 27 72 0 7 222 270 55 Caenorhabditis briggsae Protein CBR-RPS-23 (Cbr-rps-23), partial mRNA blastn 19828 250 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
25006688 25006688 PRJNA795983_S_NODE_44840_length_218_cov_5.572414_g44715_i0 PRJNA795983 44840 218 5.572414 12.14786252 Pristionchus pauli 376545 Nematoda Nematoda 110 1.13e-19   NTclustered gi|150982019|gb|EF634598.1| 376545 g44715 i0 93.243 1.08256880733945 74 5 34 0 67 140 37 110 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 236 110 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;