RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA795983" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA795983 · 1 ✖

analysis 1

  • blastn · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17358600 17358600 PRJNA795983_S_NODE_41554_length_243_cov_0.905882_g41429_i0 PRJNA795983 41554 243 0.905882 2.20129326 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 169 2.0799999999999997e-37   NTclustered gi|1752408182|ref|XM_777444.5| 7668 g41429 i0 83.799 2.79423868312757 179 28 73 1 3 180 474 652 PREDICTED: Strongylocentrotus purpuratus ras-related protein Rab-2A (LOC577200), mRNA blastn 679 169 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;